K29315

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29315

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29315

Determination of introduced cDNA(s)

J013069D01 - Rice Full-length cDNAs - Original: J013069D01

full reading [+] show sequence

TGGGATGATT TGACCTCTCC TTCCTCTCCC TCTGCTTCGT CCGTCCTGTA 
GCCATTGTTG ACTAGGAGGA GGAGGAGGAG GAGGAGGAGG AGGGATTGAT 
TGGTGAGCTC GTGTTGGTAT TTTTGTTTGT TTGTAGGGAG GAGAGGTGGT 
TGCTGCGGCG GCGGAGGACG GCGATGGCGC GGCCGCCGGT GCTCTCCGTC 
GCGCTTCCCT CCGACACGGG ACGCGTGCTC AGCATCCAGT CCCACACCGT 
CCAGGGATAC GTTGGCAACA AATCAGCAGT CTTTCCCCTG CAACTCCTGG 
GCTTTGATGT GGATCCGATA AACTCGGTAC AGTTTTCTAA TCATACAGGG 
TACCCAACAT TTAGAGGACA GGTCCTCAAC GGCAGTCAGC TGTGGGATCT 
TATTGAAGGG CTGGCGGAAA ACGATTTATT GCATTATACC CATTTATTAA 
CAGGTTATAT TGGATCTGTT TCCTTTTTAA CTACTGTACT ACAAGTTGTT 
GACAAATTAC GATCAGTCAA TCCTGATCTT GTATATGTTT GTGACCCGGT 
TCTAGGTGAT GAAGGGAAAC TATATGTCCC TCAGGATTTA ATATCTGTTT 
ATCAACAGAA GGTTGTCCCA GTTGCTACAA TGCTTACACC TAACCAATTT 
GAAGTTGAAC TACTCACTGG TTTAAGGATT ACCTGTGAAG AAGATGGCTT 
GAAAGCTTGC AATGCGCTAC ATAGTGCTGG ACCGCGAAAG GTGGTAATAA 
CTAGTGCACT TATTGAAGAT AAGCTGCTCC TCATTGGAAG CCACAAAAAA 
GCAAAGGAAC AACCACCAGA ACAATTTAAG ATTGAGATAC CCAAGATACC 
TGCATATTTC ACGGGCACTG GAGATTTAAC AACTGCCCTT CTACTAGGAT 
GGAGTAATAA ATACCCTGAT AACCTTGAGA GGGCGGCTGA ACTGGCGGTA 
TCCAGTTTGC AGGCACTCCT AAGGAGAACT GTGGAAGACT ATAAAAGAGC 
TGGGTTTGAC CCCTCCACCA GCAGCCTAGA GATCCGCTTG ATTCAAAGCC 
AGGATGAAAT TCGAAGGCCC CAGATTACAT GCAAGGCTGT GAAGTATAGC 
TGAAACCATA TCACAACCAT GGCAAGCATC ATCAAACATC AATTAGTGAA 
TAGTGACTGG AGGGAGAGTA CCAGTGTTAA AAACAATTTT GGTATTCTGC 
TTGTATGCAC AATATTCATC AACATGCTTC CTGGCTTCAA CTCTGGGGAT 
ACCATTTTAG TTGATCATAG TTTCAAAACA AGAAAGGGTC TGATTTCAAA 
AACAAAATAA TACACATGCT GCCTTCTCTC TCTCTCTCTC TCTCTCTCTC 
TCTCTTTAAT CTCCTTTACA ATTTGTCATG TTTTTGTGCC TATGAGACTG 
ATATTGTACA AGGGATAGCT CCATCTTGGA AAGCTTTATT TTGTGTAAAA 
TCTACAATGA ATAAACGGCA GTTCCGTTG

Gene models with high sequence identity

AT5G37850.2 [+] show detail - pfkB-like carbohydrate kinase family protein
E-value: 6e-130; Score: 461.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	8.2e-84
HMMPfam	Phosphomethylpyrimidine kinase type-1	1.2e-12
HMMPanther	PYRIDOXINE KINASE	9e-122
HMMTigr	Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase	5.7e-79
superfamily	Ribokinase-like	1e-66

See the detailed result >

AT5G37850.2

Model type: Protein coding
Short Description: pfkB-like carbohydrate kinase family protein
Curator Summary: Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+.
Computational Description: SALT OVERLY SENSITIVE 4 (SOS4); FUNCTIONS IN: pyridoxal kinase activity, kinase activity; INVOLVED IN: pyridoxine biosynthetic process, hyperosmotic salinity response, trichoblast differentiation, pyridoxal 5'-phosphate salvage; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase (InterPro:IPR004625), Phosphomethylpyrimidine kinase type-1 (InterPro:IPR013749); BEST Arabidopsis thaliana protein match is: thiamin biosynthesis protein, putative (TAIR:AT1G22940.1); Has 6118 Blast hits to 6115 proteins in 1907 species: Archae - 81; Bacteria - 5074; Metazoa - 195; Fungi - 190; Plants - 75; Viruses - 0; Other Eukaryotes - 503 (source: NCBI BLink).
Link: InterPro Scan - TAIR