K29334

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29334

Determination of introduced cDNA(s)

J023004K23 - Rice Full-length cDNAs - Original: J023004K23

full reading [+] show sequence

GAGCTCGTGA GTCGACCCGA CCCTCCTCAG ATCTCGCCGG CGGCAGCGGC 
GGCATGCTGC TCCCCACCTC CGCCTCCGCC TGCCGCGGCA GCGGCCGCGC 
GCTCCTCCTC GCCCTCGCCG CCGCCCTCCT CGCCCTCGCC ACGCCGCGCC 
CCGCCTCCGC CTCCGAGTCA GACCACAAGT ACAAAGTTGA AGAACCAGTT 
AAGCTCTGGG TGAACAAAGT CGGCCCTTAC AATAATCCAC AAGAAACTTA 
CAACTATCAC AGCCTTCCAT TTTGTCAACC ATCTGAGAAC CCTGCGCATA 
AATGGGGTGG TCTTGGAGAG GTCCTGGGTG GAAATGAGCT GATTGATAGT 
CAGATTGACA TAAAGTTCTT AAGAAATGAG GAGAGGGGCT CCATTTGTAC 
ACTTGAGCTT GATTCTAAAA AGGTTCAGCA GTTCTCCGAT GCCATTGATA 
ACTCATACTG GTTCGAGTTT TTCATGGATG ATCTGCCTCT TTGGGGTTTT 
GTTGGGGAGA CGGACAAAAA CAATGAAAAC AAGCGTTATC TCTACACACA 
CAAGAGCATT CTTGTCAAAT ACAATGATAA CAGGATCATT CATGTTAATC 
TCACCCAAGA GTCTCCTAAG CTTCTTGAAG CTGGTAAGAA ATTGGACATG 
ACATATTCAG TGAAGTGGTT ACAAACAGAT GTGACCTTTG CACGCCGCTT 
TGAAGTATAC CTGGATTATC CTTTCTTTGA GCACCAGATT CATTGGTTCT 
CCATTTTCAA TTCTTTCATG ATGGTTATTT TCCTCACTGG TTTGGTTTCA 
ATGATATTGA TGCGGACATT GAGAAATGAC TATGCAAAGT ATGCTCGTGA 
AGATGATGAT CTGGAGTCAC TGGAGAGAGA TGTTAATGAG GAATCTGGAT 
GGAAGCTTGT TCATGGTGAT GTATTTCGCC CTCCTCGAAG TTTGGCCTTT 
CTTTCTGCAG TTGTTGGCAT CGGCACTCAG CTGGCAGCTC TTATCCTTCT 
TGTTATTGTA TTGGCCATTG TTGGCATGCT ATATGTTGGG CGAGGGTCTA 
TCATCACAAC CTTCATTGTG TGCTATGCTC TTACATCTTT TATTTCTGGC 
TATGTCAGTG GTGGCCTCTA CTCAAGGAAT GGTGGTAAAA ACTGGATAAA 
GGCTATGATC CTTACAGCAT CCCTATTTCC ATTCTTGTGC TTTGCAATTG 
GCTTTGTTCT GAATACAATT GCTATCTTCT ACCGATCATT AGCGGCAATA 
CCATTCGGCA CAATGGTTGT CATGTTCGTT CTTTGGGCCT TCATTTCTTT 
TCCGCTGGTG CTTCTGGGAA CTGTTGTTGG TAGGAACTGG AGTGGTGCTC 
CTAACAATCC CTGCCGAGTA AAGACTATTC CACGGCCTAT TCCAGAGAAG 
AAGTGGTACC TTACACCTTC TGTTATCTCA TTGATGGGTG GGCTGCTTCC 
CTTTGGCAGT ATCTTCATTG AGATGTACTT TGTGTTCACG TCATTCTGGA 
ACTACAAGGT TTATTATGTC TACGGCTTCA TGCTGCTGGT CTTTGTCATC 
CTTCTAATAG TTACAATCTG TGTCACTATT GTGGGTACTT ATTTCTTGCT 
GAATGCTGAG AACTATCACT GGCAATGGAC TTCATTTCTC TCTGCTGCAT 
CAACTGCGTT ATATGTGTAT CTATATTCCA TCTACTACTA TCATGTAAAG 
ACAAAGATGT CAGGTTTTTT CCAGACGAGT TTCTACTTCG GTTACACATT 
GATGTTCTGC CTTGGTCTAG GCATACTTTG TGGTGCTATT GGCTATCTAG 
GGTCAACTCT TTTTGTGAGG AGAATCTACA GAAACATCAA ATGTGATTAG 
ATGATCGCAG TTTGGAAGAC ATAGCAGATC ACATGTTGTC ACTGGAACTG 
TGGTAGAGAG GCCAAGAAGT GGATTAATGC TAGATGCTGA TTAAGTTTTT 
TGAGCCACAG ACCGAAGGGG GGCCATGATC TCCTAACTTA ATATAAATAC 
ATTCATACGC CTACTCTCTT TTTTGACTAT GTCGCCCTGA TTATGCATAC 
CTGTGGTAGT TGAGGATTTG GTTGGTTTTT TAATCAGAAG TAGGATGTAA 
CATTGTAACA TGTGAAATAT TCATGCGGCA CT

Gene models with high sequence identity

AT1G10950.1 [+] show detail - transmembrane nine 1
E-value: 0; Score: 839.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Nonaspanin (TM9SF)	1.1e-185
HMMPanther	ENDOMEMBRANE PROTEIN EMP70	0
HMMPanther	Nonaspanin (TM9SF)	0

See the detailed result >

AT1G10950.1

Model type: Protein coding
Short Description: transmembrane nine 1
Curator Summary: Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.
Computational Description: transmembrane nine 1 (TMN1); LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1611 Blast hits to 1538 proteins in 326 species: Archae - 0; Bacteria - 16; Metazoa - 610; Fungi - 273; Plants - 454; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).
Link: InterPro Scan - TAIR