K29408

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29408

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29408

Determination of introduced cDNA(s)

J033136G21 - Rice Full-length cDNAs - Original: J033136G21

full reading [+] show sequence

GGAAGTCGCC CCCTCGCCTC CATCTCTCTC ATCTGCCCTC CTCGACTCGA 
CTCGACTCCC CTCCGCCGCC GCCGCCGCCA TCTTCCTCCT CCACCAGACC 
ACCACCACCA CCAACAACAA CTCGTCGTCG CGTCTGCCTA GCTAGGGTTT 
CCCTTCTCTA CCCAACCCTA GGAGGAAGAT GAGCCGCAGC CTTGGTATCC 
CAGTGAAGCT GCTGCACGAG GCGGCGGGGC ACGTGGTGAC CGTGGAGCTC 
AAGACCGGCG AGGTGTACCG CGGCTCCATG GTCGAGTGCG AGGACAACTG 
GAACTGCCAG CTCGACAACA TCACCTTCAC CGCCAAGGAC GGCAAGGTCT 
CCCAGCTGGA GCACGTCTTC ATCAGAGGAA GCAGGGTCAG GTTCATGATC 
ATACCCGACA TGCTCAAGAA CGCCCCCATG TTCAAGCGCC TCGAGGCTAG 
GATTAGGGGT AAAGGCTCAG CTATTGGTGT TGGCCGTGGC CGTGCCGTTG 
CTATGCGTGC TCGGGCTGCT GCTGGTCGTG GTGGTGGTCC AGTTGGACGG 
GGTGGTGCAC CTCCTGTGAG GCGGTAGATT TACGGGCAGC TCATTGTATG 
CTGTTATGAT ATGGAGGAAG TCCAGGGAGT CTTTGTGTTC ATGATCCAAA 
ACGTTGGTTC AGCAGCCAGA GTGCATGTGA GCTAAGCTTA TGTACCTCCA 
TCCAGTTTAG TTTGCCTGTG TGCAGAATGG ATGGATGCAT GCCGGTGGTG 
TTAACTCGTA AGCATGATGT ATTGCAGCGA ACTTTAGTAG CTCGGCTCAA 
GTTTTCATAG GTGGGGCAGC GTTTTCATGT ATGTAGACTA GTGACTCTTG 
ACTTGTTTCG TTATTAATCC ACTGTACCCT GCTGCCCGTT GATATGAATG 
AATATTGCTG C

Gene models with high sequence identity

AT1G20580.1 [+] show detail - Small nuclear ribonucleoprotein family protein
E-value: 1e-45; Score: 180.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Like-Sm ribonucleoprotein (LSM)-related domain	2.9e-29
HMMPanther	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3	2.2e-70
HMMPanther	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	2.2e-70
Gene3D	no description	1.1e-24
HMMPfam	Like-Sm ribonucleoprotein (LSM) domain	1.7e-14
HMMSmart	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	4.3e-16

See the detailed result >

AT1G20580.1

Model type: Protein coding
Short Description: Small nuclear ribonucleoprotein family protein
Computational Description: Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1); Has 1253 Blast hits to 1253 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 480; Fungi - 336; Plants - 223; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).
Link: InterPro Scan - TAIR