K29428

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29428

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29428

Determination of introduced cDNA(s)

  • J023034P03 - Rice Full-length cDNAs - Original: J023034P03

    full reading [+] show sequence

    Nucleotide sequence: J023034P03 - full reading 
    GTGTAGTAGC AGTAATGACG GCAGCAACTA GCAAGAACGT CGTCGTGCTG 
    TTCCCCTTCC CTGGCCATGG GCACCTCGCC GCCTTCTTGT CCTTCGCCGG 
    CGTCCTCCAC CGCGCCCTCC CAGACGTCGC CATCACCCTC GTCTCGACGC 
    CACGCAACGT GGCCAGCCTG CGGCGAGCCA CGTCGGCAGG ACATGACTCC 
    TTTCTATTAC ACGAGCTGCC GTTCGTGCCG GCCGACCATG GCCTCCCGGC 
    GGGCTGGGAG TCCTCCGACG GCGTCCCCCA CAATCGCTTC CCGGACTTCC 
    TCGAGGCCTT GGAGGTGCTC CAGCCGGCCT TCGACGACTT CGTCGCCGGC 
    GCCACCGCCG CCGGCGACGT CGCTGTCTGC GTCGTCTCCG ACCCGTTCTT 
    GGCGTGGACG GTGACCGTCG CGCGGCGCCG CGGGTGCGCC CACGCCTTCT 
    TCGTGTCGTG CGGCGCGTTC GGCAGCGCCG TCGTGCACTC GCTCTGGAGC 
    CACCTCCCCA TTCGCCCCGA CGAGGCCGGC CGGATCCTCC TACCGGAGTA 
    CCCCGACGTG GTCATCCACA GGTCGCAGGT GTCCAGCAAC GTGCTCCACC 
    CGCCCACGGC CGTGAAGCAC CGCGTCGAGG CGTTCTTCGG GCGGCAGATA 
    CAGCTGGGGT ACAAGACGGA CGCGCTGCTC ATCAACACCG TGGAGGAGTT 
    CGAGCCCACC GGGCTCGCCA TGCTCCGGCG AACCTTCAGG CTCCCGGTAA 
    TTCCAATCGG CCCACTCGTG CGCGCCTCCA CCAAAACAAC CTCGCCGGAG 
    ACGGACGCCA CCGCCGGCGC CATCACCAGT TTTCTCGACT CCCACCCTCC 
    GTCGTCGGTG CTCTACGTAT CGTTCGGGTC ACAGTTCTCC ATCCAAGCAG 
    AGCACATGGC GGAGCTGGCC GCCGCACTGG AGGCCACCGG CCGGCCGTTC 
    GTCTGGGCCG TGAAGCCGCC GGACGGGCAC AACATAAACG GCGAGATCCA 
    GCCGAAGTGG CTTCCCGACG GATTCGAGGA GAGGGTGACG GCGACCAAGA 
    AAGGCCTCCT CCTCCATGGA TGGGCGCCGC AGGTGGGGAT CCTGGCGCAT 
    CACTCCACAG GAGCGTTCCT GAGCCACTGC GGGTGGAACT CGGTGCTGGA 
    GAGCATGACG CACGGCGTGC CGATCATCGG GTGGCCGCTC GCCGGCGATC 
    AGTACTACAA CGCCAAGATG CTCGACGAGG AGTGGGGGGT GTGCCTCCGC 
    GTGGAGGGGG CACGGGGGGA CATGGACATG AGTGCCATTA TTGTGGACAA 
    AGCGACGCTG GTTGCCGTGG TGGAGACGGT GATGTCTCCA ACAGCGAAGG 
    CGGCCGAGAT GCGGCAGCGG GCGAGAGCGA TCAAGGAGAT CATGGAAGCT 
    GCACGGGAGG GTGGACATGG CTCGTCGGCA AATCAGGCAT TGGAGGAGTT 
    CTTCAAAACA ATGAAGCTGA ACGGCTGAAG TTGGAACAAA ATCCAAGGTT 
    ACTTATTTAC TATGCTAGCC GCTGTGTTAT TCTGAATCAT TTGTTATTAC 
    TTACCACATC CACAATGTTG CATGTAAAAT GATCTTAAGG AATAAAGTAA 
    TATATTTGTT TTACCTCTAC C

    Gene models with high sequence identity

    1. AT5G12890.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
      E-value: 2e-74; Score: 276.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.2e-19
    HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 3.6e-27
    PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
    HMMPanther UDP-GLUCOSYLTRANSFERASE 9.1e-97
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 9.1e-97
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 4.9e-56

    See the detailed result >

    AT5G12890.1

    Model type
    Protein coding
    Short Description
    UDP-Glycosyltransferase superfamily protein
    Computational Description
    UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT2G36780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR