K29502

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29502

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29502

Determination of introduced cDNA(s)

  • J023014J18 - Rice Full-length cDNAs - Original: J023014J18

    full reading [+] show sequence

    Nucleotide sequence: J023014J18 - full reading 
    AAGACGAGCC GCCCGGCGCC GACGGCGAGC TCCTCCTCCC CATCGACGAC 
    TACGCGTTCT CCGCCGTCGA CGAGACGCAG CCACCACCAC CACCGGAGCA 
    TCAGCAGCAG CAGCAATTCA CCCAGATGCC TCTCCCGGTG ATGGGCGGCG 
    CGGCGGCGGA GCACCCGGCG CTGCAGGCGC AGCTGAGCAG CACCGCCACC 
    GAGCTGATGC AGTACGCCGG GTTCACCGAC GAGGTCTTCG CGGCGGCGTT 
    GGCCACTGGA GCCGGAGCTG GGGCGGGAGG GTACATGGGC CTGGACGACC 
    CGCTCTGCCC GCAGCAGCAG CATTCCGGCG CGATGCTCCC CGCCGCCGCC 
    GCCGCCGCCG GCGAGGCGTT CTTCAGCAAG GACGCGCACG CGGCGCAGGC 
    CGCCTTCTTC GCCGCGGCCG GCGGCGGCGG CGGAAGCATG GTGATGTCGA 
    TGATGGGAAT GGACGAGATC GGCGAGTACC AGCGGATGAT GGAATGCGGC 
    GGCGCGCTTC TCGGCGCCAC CCACGCCGCC GACGGCGCCG ACATGGCCTT 
    CGGCAACGCC GCCGCCGCAG AGTTGCAGAT GGGCGGAGGC GGGAGTAGCC 
    CAGCGCGGCT GCCGGCGACG GGGACGACGG AGACGACGAG CTTGGAGGAC 
    ACGAGCTTCA AGACCGTCCG CCTCTCCAAC GAGGAGAGGA AGGAAAAGAT 
    CCACAGGTAC ATCAAGAAGA GGAACGAGAG GAATTTCAGC AAGAAGATCA 
    AGTACGCTTG CAGAAAAACC CTCGCGGATA GCCGGCCTCG CGTCCGTGGT 
    AGGTTCGCCA AGAACGACGA CTACTGCGAG GCATCCAGGT CGATCGGCTC 
    GCAGAATCAC GAAGAGTATG AACAAATTGG CGGCGTGAAG GGAGAAGACA 
    TGCTTGATTC TGACGCTCTA GCGCATATCA GCGGGATGAG CTCATACATG 
    TACAATCACA CAGTGGAATC CTGGATATAA ACTCATACGA CACAGCACTG 
    AGAAACTCTC TCGAATTGCT TTTTCTTTTT TTTTCCACCC TATTTTGTGC 
    AGATTTAACC GGTCCTTTAC TTCAAACCTC TGAATAATTT TGTAGAAATT 
    TGATGTATGT TGATCAGCTG GAGTTGCTGT AGGGTCGGTC TGTTGTCATA 
    TCAATCTGCT TTTCACTTGT TTGTCATTCT TGCAGGTGAA TGAAATAGAT 
    AGAGTTAATT TGCATAATTT GTATAGATAC AAATGTCGTG TGTACTTAAC 
    GATGTTAGAA GGCATTTTGA AATGCCTAGT ATGTTTTGAG GTGGTCCTGG 
    AAACGGTTGA GAAAATTGGA GCAGGGAAAA TCAATATAGA TTTAGGCCTT 
    TAGCAATCTG AGGGTGTAAA GGAAAAGGAT ATATTTGCAA ATGTTTGACG 
    GTATAATACC TCTATATGAA TATATTATAC TATTGACTTT ATTC

    Gene models with high sequence identity

    1. AT1G04500.1 [+] show detail - CCT motif family protein
      E-value: 1e-32; Score: 137.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan CCT domain 15.567
    HMMPfam CCT domain 2.8e-19
    Coil coiled-coil 0

    See the detailed result >

    AT1G04500.1

    Model type
    Protein coding
    Short Description
    CCT motif family protein
    Computational Description
    CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G33350.2); Has 1789 Blast hits to 1789 proteins in 111 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 2; Plants - 1654; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR