K29525

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29525

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29525

Determination of introduced cDNA(s)

  • J033108J10 - Rice Full-length cDNAs - Original: J033108J10

    full reading [+] show sequence

    Nucleotide sequence: J033108J10 - full reading 
    GATCGCACAC TCCAAGCTAA GCCTAAGCGA GCGAGAAAAA ATAGCAAAAG 
    CTAGCCGGCA AGCAACGCCA ACTAATTAGG GGAGAGAGAT ATTCATGGCT 
    CCGGCGGCGG TGGCTGCGGC GGAGGCGGGG TCGAAGGCGG CGGCGGTGGC 
    GGGGAAGGCC GTGGCGGCGT GCGAGCGCGA CGCGGAGAAG CTGGAGTTCA 
    TCGAGGAGAT GACGAGGGGG TTCGACGCGG TGCAGGAGCG GGTGCTGGCG 
    GCGATCCTGG CGCGGAACAA CGGCGCCGAG TACCTCCGCC GCCACGGCAT 
    GGAAGGGCGC ACCGACCGGG AGGCGTTCAA GGCGCGCGTC CCCGTCGTCA 
    CCTACGAGGA CCTCCGCCCG GAGATCGAGC GCATCGCCAA CGGCGACCGC 
    TCCAACATCA TCTCCTCCCA CCCCATCACC GAGTTCCTCA CCAGCTCGGG 
    GACTTCGGCG GGGGAGAGGA AGCTAATGCC GACGATAGAA GATGAGCTGG 
    ACAGGAGGCA GATGCTCTAC AGCCTCCTCA TGCCCGTCAT GAACTTGTAC 
    GTGCCAGGGC TGGACAAGGG CAAGGGGCTC TACTTCCTGT TCATCAAGTC 
    GGAGACGAAG ACGCCCGGCG GGCTGCCGGC GAGGCCGGTG CTGACCAGCT 
    ACTACAAGAG CGATCACTTC AAGCACCGCC CCTTCGACCC CTACAACGTG 
    TACACGAGCC CGACGGCGGC CATCCTGTGC ACCGACGCGT TCCAGTCCAT 
    GTACGCGCAG ATGCTGTGCG GCCTCGTGGC GCGCGCCGAG GTGCTCCGCG 
    TCGGCGCCGT CTTCGCCTCG GGCCTCCTCC GCGCCATCCG CTTCCTCCAG 
    CTCCACTGGA GGGAGCTCGC CCACGACATC AGGACCGGGA CGCTGAGCGC 
    CAAGGTGACG GAGCCGTCCA TCCGCGACGC CGTGGCGGAG GTGCTCGCGG 
    CGCCCGACGC CGAGCTCGCC GCGTTCGTGG AGGCCGAGTG CGGGAAGGAC 
    AAGTGGGAGG GGATCATCAC CAGGATGTGG CCCAACACCA AGTACCTCGA 
    CGTGATCGTC ACGGGCGCCA TGGCGCAGTA CATCCCCACG CTCAAGTTCT 
    ACAGCGGTGG GCTCCCCATG GCGTGCACCA TGTACGCGTC GTCCGAGTGC 
    TACTTCGGCC TCAACCTGCG CCCCATGTGC GACCCGTCGG AGGTGTCGTA 
    CACCATCATG CCCAACATGG GCTACTTCGA GCTTATGCCG CACGACCCGG 
    ACGCGCCGCC GCTGCCCCGC GACGCGCCGC CGCCGCGGCT CGTCGACCTG 
    GCCGACGCCG AGGTCGGGAG GGAGTACGAG CTGGTGATCA CCACCTACGC 
    GGGGCTCTGC CTACCGCGTG GGCGACATCC TGCAGGTGAC CGGGTTCCAC 
    AACGCGGCGC CGCAGTTCCG GTTCGTCCGC CGCAAGAACG TGCTCCTCAG 
    CATCGACTCC GACAAGACGG ACGAGGCGGA GCTGCAGGCC GCGGTGGAGC 
    GCGCGTCCGC GCTGCTGTCC CCCTACGGCG CCAGCATCGT GGAGTACACG 
    AGCCAGGCGG ACGCGACCAC CATCCCGGGG CACTACGTGG TGTACTGGGA 
    GCTGATGGTG CGGGAGGGCG GCGCGTGGCC GCCGCCGGCG GAGGAGGAGG 
    GCCGCGGCGT GTTCGAACGG TGCTGCCTCG AGATGGAGGA GGCGCTCAAC 
    GCCGTGTACA GGCAGGGACG CAACGGCGAG GCCATCGGGC CGCTCGAGAT 
    CCGGGTGGTG CGCGCCGGCA CGTTCGAGGA GGTGATGGAC TACGCCATCT 
    CCCGCGGCGC CTCCATCAAC CAGTACAAGG CGCCGCGCTG CGTCTCCTTC 
    GGCCCCATCA TCGAGCTGCT CAACTCGCGC GTCATCTCCA AGCACTTCAG 
    CCCGGCTTGC CCCAAATACA GCCCGCACAA GAAGTGATCA CTCACTACAC 
    TACACGGTCC AGTTGAGCTA GACGACACAA CGATATATAG CCTTCTACTA 
    CAACTACTAC TACCAGCACT CAGTCCCAGT GCTTATACAG TCGGTGTCAG 
    TGTCAGTGCG TGTGTAATTT CTCGTGTTTA AGGCAGAGGG CATCAGGGCC 
    ATACTCCTGG ATGCCTGCTT CTTTGATCTT AGATCATGCT GTCCAGTGGT 
    AGTTACCATG TAATCATGTG TGAGATGTTA TTTCTGAAGT GGAAATGGCG 
    AGTGTTTGTG ATGGGGTAAG CTGGTAACGT CATTCTTGGC CGAATAACAT 
    AATAGGCCTT GTTGGAGTAT CTACCAACAA CTTCTGTTGA CCCATATGTA 
    CTTTTTTCTG CTTGTGCAAA AATGGGAGTG AACTAGTGAC TCTGACACCC 
    CAGGAATTCA ACCCC

    Gene models with high sequence identity

    1. AT4G37390.1 [+] show detail - Auxin-responsive GH3 family protein
      E-value: 0; Score: 254.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam GH3 auxin-responsive promoter 3.6e-138
    HMMPfam GH3 auxin-responsive promoter 7.3e-57

    See the detailed result >

    AT4G37390.1

    Model type
    Protein coding
    Short Description
    Auxin-responsive GH3 family protein
    Curator Summary
    Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. May function as a negative component in auxin signaling by regulating auxin activity.
    Computational Description
    BRU6; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G59500.1); Has 1707 Blast hits to 1543 proteins in 239 species: Archae - 1; Bacteria - 597; Metazoa - 55; Fungi - 2; Plants - 674; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR