K29525

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29525

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29525

Determination of introduced cDNA(s)

  • J033108J10 - Rice Full-length cDNAs - Original: J033108J10

    full reading [+] show sequence

    Nucleotide sequence: J033108J10 - full reading
    GATCGCACAC TCCAAGCTAA GCCTAAGCGA GCGAGAAAAA ATAGCAAAAG 
    CTAGCCGGCA AGCAACGCCA ACTAATTAGG GGAGAGAGAT ATTCATGGCT
    CCGGCGGCGG TGGCTGCGGC GGAGGCGGGG TCGAAGGCGG CGGCGGTGGC
    GGGGAAGGCC GTGGCGGCGT GCGAGCGCGA CGCGGAGAAG CTGGAGTTCA
    TCGAGGAGAT GACGAGGGGG TTCGACGCGG TGCAGGAGCG GGTGCTGGCG
    GCGATCCTGG CGCGGAACAA CGGCGCCGAG TACCTCCGCC GCCACGGCAT
    GGAAGGGCGC ACCGACCGGG AGGCGTTCAA GGCGCGCGTC CCCGTCGTCA
    CCTACGAGGA CCTCCGCCCG GAGATCGAGC GCATCGCCAA CGGCGACCGC
    TCCAACATCA TCTCCTCCCA CCCCATCACC GAGTTCCTCA CCAGCTCGGG
    GACTTCGGCG GGGGAGAGGA AGCTAATGCC GACGATAGAA GATGAGCTGG
    ACAGGAGGCA GATGCTCTAC AGCCTCCTCA TGCCCGTCAT GAACTTGTAC
    GTGCCAGGGC TGGACAAGGG CAAGGGGCTC TACTTCCTGT TCATCAAGTC
    GGAGACGAAG ACGCCCGGCG GGCTGCCGGC GAGGCCGGTG CTGACCAGCT
    ACTACAAGAG CGATCACTTC AAGCACCGCC CCTTCGACCC CTACAACGTG
    TACACGAGCC CGACGGCGGC CATCCTGTGC ACCGACGCGT TCCAGTCCAT
    GTACGCGCAG ATGCTGTGCG GCCTCGTGGC GCGCGCCGAG GTGCTCCGCG
    TCGGCGCCGT CTTCGCCTCG GGCCTCCTCC GCGCCATCCG CTTCCTCCAG
    CTCCACTGGA GGGAGCTCGC CCACGACATC AGGACCGGGA CGCTGAGCGC
    CAAGGTGACG GAGCCGTCCA TCCGCGACGC CGTGGCGGAG GTGCTCGCGG
    CGCCCGACGC CGAGCTCGCC GCGTTCGTGG AGGCCGAGTG CGGGAAGGAC
    AAGTGGGAGG GGATCATCAC CAGGATGTGG CCCAACACCA AGTACCTCGA
    CGTGATCGTC ACGGGCGCCA TGGCGCAGTA CATCCCCACG CTCAAGTTCT
    ACAGCGGTGG GCTCCCCATG GCGTGCACCA TGTACGCGTC GTCCGAGTGC
    TACTTCGGCC TCAACCTGCG CCCCATGTGC GACCCGTCGG AGGTGTCGTA
    CACCATCATG CCCAACATGG GCTACTTCGA GCTTATGCCG CACGACCCGG
    ACGCGCCGCC GCTGCCCCGC GACGCGCCGC CGCCGCGGCT CGTCGACCTG
    GCCGACGCCG AGGTCGGGAG GGAGTACGAG CTGGTGATCA CCACCTACGC
    GGGGCTCTGC CTACCGCGTG GGCGACATCC TGCAGGTGAC CGGGTTCCAC
    AACGCGGCGC CGCAGTTCCG GTTCGTCCGC CGCAAGAACG TGCTCCTCAG
    CATCGACTCC GACAAGACGG ACGAGGCGGA GCTGCAGGCC GCGGTGGAGC
    GCGCGTCCGC GCTGCTGTCC CCCTACGGCG CCAGCATCGT GGAGTACACG
    AGCCAGGCGG ACGCGACCAC CATCCCGGGG CACTACGTGG TGTACTGGGA
    GCTGATGGTG CGGGAGGGCG GCGCGTGGCC GCCGCCGGCG GAGGAGGAGG
    GCCGCGGCGT GTTCGAACGG TGCTGCCTCG AGATGGAGGA GGCGCTCAAC
    GCCGTGTACA GGCAGGGACG CAACGGCGAG GCCATCGGGC CGCTCGAGAT
    CCGGGTGGTG CGCGCCGGCA CGTTCGAGGA GGTGATGGAC TACGCCATCT
    CCCGCGGCGC CTCCATCAAC CAGTACAAGG CGCCGCGCTG CGTCTCCTTC
    GGCCCCATCA TCGAGCTGCT CAACTCGCGC GTCATCTCCA AGCACTTCAG
    CCCGGCTTGC CCCAAATACA GCCCGCACAA GAAGTGATCA CTCACTACAC
    TACACGGTCC AGTTGAGCTA GACGACACAA CGATATATAG CCTTCTACTA
    CAACTACTAC TACCAGCACT CAGTCCCAGT GCTTATACAG TCGGTGTCAG
    TGTCAGTGCG TGTGTAATTT CTCGTGTTTA AGGCAGAGGG CATCAGGGCC
    ATACTCCTGG ATGCCTGCTT CTTTGATCTT AGATCATGCT GTCCAGTGGT
    AGTTACCATG TAATCATGTG TGAGATGTTA TTTCTGAAGT GGAAATGGCG
    AGTGTTTGTG ATGGGGTAAG CTGGTAACGT CATTCTTGGC CGAATAACAT
    AATAGGCCTT GTTGGAGTAT CTACCAACAA CTTCTGTTGA CCCATATGTA
    CTTTTTTCTG CTTGTGCAAA AATGGGAGTG AACTAGTGAC TCTGACACCC
    CAGGAATTCA ACCCC

    Gene models with high sequence identity

    1. AT4G37390.1 [+] show detail - Auxin-responsive GH3 family protein
      E-value: 0; Score: 254.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam GH3 auxin-responsive promoter 3.6e-138
    HMMPfam GH3 auxin-responsive promoter 7.3e-57

    See the detailed result >

    AT4G37390.1

    Model type
    Protein coding
    Short Description
    Auxin-responsive GH3 family protein
    Curator Summary
    Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. May function as a negative component in auxin signaling by regulating auxin activity.
    Computational Description
    BRU6; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G59500.1); Has 1707 Blast hits to 1543 proteins in 239 species: Archae - 1; Bacteria - 597; Metazoa - 55; Fungi - 2; Plants - 674; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR