K29536

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29536

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29536

Determination of introduced cDNA(s)

  • J023111D06 - Rice Full-length cDNAs - Original: J023111D06

    full reading [+] show sequence

    Nucleotide sequence: J023111D06 - full reading 
    GATATCCTCC ATCCCGCGGC GGCCGTGAGC ACCAACACTC ACGCATTCCT 
    TCCTACTCCG CGAGATCTCC GGATTCGTTT CGGTGTTTTG CGAGTCGCGC 
    CCGGAGAAGA GGAGAGGAAA TCCGGTCAAT CGCGGCGTCG GCGTGCCGTC 
    GCTTGGGGTG GTGTTGGTGG TTCTGAATTT TGATTGCTTC GTGCTTTTCG 
    TTTGGGGGAG GGCAGTGGTC GCCATGGGAT TGGGGAACGA GGCGAGCTCG 
    TCGTCGTCGC GGCTGCTGGA TCCGGCGCCT CTGCTGCCGC ACCACGGTGG 
    AGATGGCGCC GGGAAGCTGT CGTCGCAGCC CAAGACCTTC GCGAACGTCT 
    TCATCGCGGT GGTCGGCGCC GGCGTGCTGG GGCTGCCGTA CACGTTCTCG 
    CGGACCGGGT GGGCGGCGGG GTCCATCCTC CTGCTCTCCG TCGCGGCGCT 
    CACCTTCTAC TGCATGATGC TGCTCGTCGC CTGCCGCCGC CGCCTCGCCG 
    ACGAGCACCC GAAGATCGCC TCCTTTGGGG ACTTGGGGGA CGCCGTGTTC 
    CGCGGTCCGG GGCGCCTCGC CGTGGACACC ATGCTGGTGC TCAGCCAGGC 
    CAGCTTCTGC GTCGGGTACC TCATCTTCAT CTCGAACACC ATGGCGCACC 
    TTTACCCCGT CTTCGCGCCC TCCTCCAACG CGCTCCTCTC CCCAAAGGCG 
    CTCTTCATCT GGGCCATGCT GCCGTTCCAG CTCGGGCTCA ACTCCATCAA 
    GACGCTGACG CTCCTCGCGC CGCTCAGCAT CTTCGCCGAT GTGGTTGACC 
    TCGGCGCCAT GGGCGTCGTT CTCGGGGAGG ACGTGTCCGT CTGGCTCGCC 
    AAACCACCAC CCGTCTTCGC CTTCGGCGGC CTGAGCGCGA TCCTGTACGG 
    CATCGGCGTG TCCGTGTACG CCTTCGAGGG AATCGGCATG GTCCTTCCGC 
    TTGAGGCGGA GGCCGCCAAC AAGAAGAAGT TCGGGACCAC GCTCGGGCTA 
    TCCATGGGGT TCATCGCCGT CATGTACGGC CTGTTCGGCG CCATGGGGTA 
    CATCGCTTTC GGCGACGCCA CGCGCGACAT CATCACCACC AACCTCGGGA 
    CCGGGTGGCT CTCGGCCGCC GTGCAGCTCG GGCTGTGCAT CAACCTCTTC 
    TTCACCATGC CGGTGATGAT GCACCCCGTG TACGAGGTCG CCGAGCGGCT 
    GCTCCACGGC AAACGCTACT GCTGGTGGCT GCGGTGGCTG CTCGTCCTGG 
    CCGTCGGCCT CTCGGCCATG TACGTGCCCA ACTTCACCGA CTTCCTGGCG 
    CTCGTCGGGA GCAGCGTCTG CGTCCTGCTC GGCTTCGTGC TGCCGGCCTC 
    GTTCCACCTC AAGGTGTTCG GCGCCGAGAT GTCCTGGTCC GGGGTGCTCA 
    GCGACGTCCT GCTCGTCCTG CTCGGCCTCT CGCTCGCCGT CTTCGGCACC 
    TACACGTCCC TGCTGCAGAT CTTCCATTCC TCCAGCGCTT AATCTCTGGA 
    GAATCTTTAC GGATAGCTGC GCCGATGATT GATTTGCTCA TTTGCTTCGC 
    GCGCGGGTGT CAGCCTGTCA GGTACGCTGG TTGCATTCTT CGTGTACAGA 
    GAAGGTGATC GGTCGATCAG AGGGGCAATG CCCAATTCAG CTTGCTGTTG 
    ATTTGGGCAT GGACAGCGTG CATCGGCCGC ATTCTTTCGA TTACAAGTCA 
    GATGGTTTGT ACAAGTTAGC GTGGATGGCA TGGAGAAATC TGTATGGTTT 
    TGCAACGACA GATTCCCATA GCTACTCGTG TCAGTTAATA TTTATGTGTA 
    TGTCTTGGAT GTTTCAGCTG CTGCATTGCA CGGTGGAATC GATGAAAGGA 
    CATAGTAAGT TTCAGTCTAA GTTTAAGCCT ATTTAGTTGA TAAATAAAGT 
    GTCTAGTTGA GGTTGCAGCT TGTGTGCGGT ACTGCGGGTT GTGTCAATTA 
    GGAAGGCAAG CAATCGGGAC GACTTGGCAA AGTATACATT CTATTCTGTT 
    CATTCTGTTT TGTCCCAAGC AAGTAAACTT GTAATGCCCC AACTACCAAT 
    CGAAATATCG AATCTTCTTT CAGCTTGCCT GTTATTACC

    Gene models with high sequence identity

    1. AT4G38250.1 [+] show detail - Transmembrane amino acid transporter family protein
      E-value: 1e-127; Score: 454.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Amino acid transporter, transmembrane 4.8e-68
    HMMPanther AMINO ACID TRANSPORTER 6.6e-88

    See the detailed result >

    AT4G38250.1

    Model type
    Protein coding
    Short Description
    Transmembrane amino acid transporter family protein
    Computational Description
    Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G42005.1); Has 5006 Blast hits to 4918 proteins in 286 species: Archae - 16; Bacteria - 54; Metazoa - 1812; Fungi - 943; Plants - 1365; Viruses - 6; Other Eukaryotes - 810 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR