K29549

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29549

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29549

Determination of introduced cDNA(s)

  • J023004G21 - Rice Full-length cDNAs - Original: J023004G21

    full reading [+] show sequence

    Nucleotide sequence: J023004G21 - full reading
    GACGGGTCAC CTGCCTCCTC CTGCCGTGCC ACAAAAAGCA AGGCAAAGCA 
    GCAGCGAGGA GGCGAGACAG ATTCCCAAAT CCCGCACAAC CCCACCCCGA
    ATCCACCACC CCACGCCAAG CCCGCTCGCC GCCGCCGCCC GAGCGCGCGC
    GCGTACGGGC ACGGCGGGCG TACGACGCCG GAGGTGGGGA TCGAGCGTGC
    CCCCTCCTCC GTCGCGGCGG GCGACGTCGG ACGTCGTCGG TCGTAGCTTG
    CCTTCGTTTC GTTGTCGGGT TTTCGGTGCT GCTGCTGCTG CTGGTGGTGG
    TCGAGCAAAG GCCGGTGGCG GATCGCCGGC GGTCCCGTCC GCGGGAGGGG
    CGCGGGTGAC GCGGTGATCA GATAAAAGTG TCCCTTCTAA CATTGCCATT
    TGGAGCTCTA TGGGTTGGTT GACCAAATTT TTTAGAGGTT CAACCCACAA
    AATCTCGGAA GGGCAATACC ACAGCAAACC CGCGGAGGAG ACGATATGGA
    ATGGACCCTC TAATTCCGCA GTTGTGACGG ATGTCCCGTC AGAATTTGAC
    AATGAAGATA TCGCTCGTGC TATATCACTC TCTCTATTAG AGGAGGAACA
    AAGAAAGGCA AAGGCAATAG AAAAGGACAT GCATTTGGAG GAGGATGAAC
    AACTTGCAAG AGCTATCCAG GAAAGTTTGA ATGTTGAATC GCCTCCTCGT
    GCTCGTGAAA ATGGCAACGC CAATGGTGGC AATATGTATC AACCACTGCC
    ATTTATGTTT TCTTCTGGAT TCAGGACTTG TGCCGGATGT CACAGTGAGA
    TTGGTCATGG GCGTTTCCTT AGTTGCATGG GAGCTGTTTG GCATCCAGAA
    TGTTTTCGCT GTCATGCTTG TAATCAACCA ATATATGACT ATGAGTTCTC
    CATGTCGGGA AACCATCCAT ACCATAAAAC ATGCTACAAG GAGCGCTTTC
    ACCCAAAATG TGATGTCTGC AAGCAATTTA TTCCTACAAA TATGAATGGC
    CTGATTGAAT ATAGAGCACA TCCTTTCTGG TTACAAAAAT ACTGTCCATC
    ACATGAGGTG GACGGTACTC CAAGATGCTG TAGTTGTGAA AGAATGGAGC
    CAAGGGAATC AAGATATGTA TTGCTGGACG ATGGTCGCAA ACTCTGCCTG
    GAGTGCCTTG ATTCTGCAGT TATGGATACG AGCGAGTGCC AACCTCTTTA
    TCTTGAAATA CAGGAATTTT ATGAAGGCCT AAATATGAAA GTGGAACAAC
    AAGTTCCCTT GCTTCTTGTA GAAAGACAGG CTTTAAATGA AGCCATGGAA
    GGAGAGAAGA CTGGTCACCA CCATCTTCCA GAAACAAGAT GTTTATGCTT
    ATCAGAAGAG CAAACTGTCA GCACGATATT GAGGAGACCA AGAATGGCTG
    GAAATAAAGT TATGGAAATG ATAACGGAGC CATATAGGTT GACTCGTCGA
    TGTGAAGTGA CTGCAATTCT CATTCTTTAT GGTCTCCCAA GATTGTTGAC
    AGGTTCAATT TTAGCTCATG AGATGATGCA TGCGTGGTTG CGACTTAAAG
    GATATCGCAC ACTTAGTCCA GACGTAGAAG AGGGCATATG CCAAGTTCTT
    GCTCACATGT GGATTGAGTC AGAGATCATT GCAGGATCAG GCAGTAATGG
    TGCTTCAACG TCTTCATCCT CATCAGCATC CACATCATCG AAAAAGGGGG
    GAAGATCTCA GTTTGAGCGA AAGCTTGGTG ATTTTTTCAA GCACCAAATT
    GAGTCAGATA CCTCAATGGC CTATGGCGAT GGTTTTAGAG CTGGCAACCG
    AGCTGTTCTT CAGTATGGTC TAAAGCGCAC CCTTGAGCAT ATCCGGTTAA
    CAGGGACTTT CCCATTTTGA AATTTCATAG ATTCGTCTTT TGATGGAAGT
    TATACACGAT CGATTTGTCA TTAAGCGTCC ATTTACAGGA AAAGAAAGCA
    ATTTTGAGAT GTGCAATTGT ACAAACAATC TTTTCAGTTA CTTTTGGAAG
    GGCTAACTGA CGACATTGAT TAAATTGTGA TATGGTTAGC CCAACCAATC
    ACACATGTAT GGCATTCAGA AATTCTAATG GAAACAGCGG TATTTTTTAT
    GTG

    Gene models with high sequence identity

    1. AT4G36860.1 [+] show detail - LIM domain-containing protein
      E-value: 0; Score: 631.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glucocorticoid receptor-like (DNA-binding dom 0.000000000018
    superfamily Glucocorticoid receptor-like (DNA-binding dom 0.0000014
    ProfileScan Zinc finger, LIM-type 12.187
    ProfileScan Ubiquitin interacting motif 9.882
    ProfileScan Ubiquitin interacting motif 10.219
    Gene3D Zinc finger, LIM-type 0.000000000017
    Coil coiled-coil 0
    HMMPanther LIM DOMAIN CONTAINING PROTEIN 0.0000000000018
    PatternScan Zinc finger, LIM-type 0
    HMMSmart Ubiquitin interacting motif 0.054
    HMMSmart Ubiquitin interacting motif 0.026
    HMMSmart Zinc finger, LIM-type 0.000000000043
    HMMPfam Protein of unknown function DUF3633 1.9e-101
    HMMPfam Zinc finger, LIM-type 0.0000000013

    See the detailed result >

    AT4G36860.1

    Model type
    Protein coding
    Short Description
    LIM domain-containing protein
    Computational Description
    LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: DA1 (TAIR:AT1G19270.1); Has 6004 Blast hits to 4271 proteins in 323 species: Archae - 7; Bacteria - 228; Metazoa - 4096; Fungi - 190; Plants - 320; Viruses - 67; Other Eukaryotes - 1096 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR