K29611

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29611

Determination of introduced cDNA(s)

J023132L07 - Rice Full-length cDNAs - Original: J023132L07

full reading [+] show sequence

GACTCTCGGA CTCTCCACTA CTCTTCGCCG CTCGCCGCCT CCTTGCTCTC 
ACCGCCGGTC ACGACGGCGC CGCCACCCAC CCGGTCCATC ACCTCCTCTC 
CCGCCGAGCA ACGCTGGAAT GGCCGGCCGC GGAAACGCCA CCGGCTCCAC 
CCGCACCCGC GCCTCCGTCA ACGTCGTCGC GGTCCACGGT GGTAAAGATT 
TGTACAAATC CTGCTCGTTG TTCCAAGATT CCGTCGATTG GTTTTCGCCG 
AAAGAAAAGC AAAATTATTC GCAAAGTGCG GCGGCGATGG AGCTATTCCC 
CGTCGATTTC CCCTTTCCAC GCCCTCCATT GGCGTTTGGC GCGACGGATC 
GGCATCAATC CCCCCTCCCC CACGAAGCTT CCATTGGTTC CCCCGCGTGT 
TCTTGACCCC TTCATCTTCC ATGGATCCGG GCATCTCACT CTCGCTGCAG 
CCATAGCTCG TCTGGGTGTT CTTGGTCTCC CAAAACCACC AAAGATCAAG 
CGTTGCACGG TTGCACCTGA GATTCAGAGA GAGGAGGATT GGGAAAGATG 
GTCGGAGCCA CGGCGAGTGC TTTGATCGGG GTGATGAATC CCCTCCTCAC 
GAAGCTCTCC GGCCTGCTCG AGAGGGAGTA CGGCAAGCTC AAGGGGGTGG 
GCCGCGAGGT CGCGCTCCTG CGAGACGAGC TGAGCAGCAT GAACACCGCG 
CTGGAGGCGG TCTCCGATTC GGAGGAGGAG CCCAGCTCGC AGGTCAAGGA 
GTGGATGCGC CAGCTGCGGG AGCTGTCCTA TGATGTAGAG GATTGCATCG 
ACGTCTTCGT GCACCGCCTT GGCCACCATG ACCCCGGCGA CGGGCTCTTC 
CGCAGGACCA AACGCCGGCT CAAGGCTCTC CGGAGCCGCC ACTGCATCGC 
AGGCCAGATC GCCGAGCTGA AGGATCGTGC CGTGCTGGTC AATGACCGGC 
GCAAGAGGTA TGAGTTGGAT GCAGCTGCAT CTAGCTCTGC TGCGATCGCC 
ATCGATTCCA GGCTGCCTGC GCTGTTCGAG GAGATGGACA GGCTTGTGGG 
CATCGAAGGT CCAAGGGATG AACTTGTTGA ATTTCTTACG GGAGGAATCA 
ATTTGGCTCC ACAACGCAGA GTTGTCTCTA TTGTCGGATT TGGGGGATTA 
GGCAAGACAA CTCTTGCCAA TCAGGTCTAT CAACATATCA AAAGCCAATT 
TGATCGCACA GCTTTTGTGT CTGTGTCACG GAATCCCAAC GTCAATAAGA 
TCCTAGCCAA CATACTTATT GGAATTCTCG AGACAAGAAA GCTATCATCA 
GTTCATCAGA AGCAGCATAG TGACACAATA GAAGATCTAA AGCACAAAAC 
TTTTGAAGAT TGTAAGCTTA TCAGCCTGAT AAGAGAAAAC CTACAGAATA 
GCAGGTACTT CATTGTAATT GATGATATAT GGGATAAAGC TGCATGGCGA 
GACCACCTCC GATTTGCTTT TCCTGAGAAT AACTCTGCAA GCAGAATAAT 
TACAACTACA CGCATCAATG ATGTAGCTAT AGCTTGTCAC TTCTCACATG 
AAGATTTTGT TTATGCCATG AAGCCCCTTA GCAGTGAGAA CTCTGAGGCA 
TTATTTTTTA GAAGAATCTT TAGCTCCAAG GAGAAATGCC CCCCTGAATT 
GGAAGAAGTT GCTGATGATA TACTTAAAAA GTGTGATGGT TTGCCATTGG 
CCATAGTTAG TATAGCTAGC CTTTTATCAT GTAAACCAGT TACGAAGCAG 
GAGTGGGTAT GGGTGCTGAA CTCCTTTGGT TCTACAGTTA TGAAAGATCA 
GGGGTCACAC GAGTTGGCAG TAGTGAAGAG GATACTATTT CTTAGTTACA 
GTGATCTACC TCACCACTTA AAGTCTTGTC TTTTGTATTT AAGCATTTTC 
CCTGAGGATC ATACAATTAC TAGAGATTTT TTGATATCGA GATGGATCGC 
TGAAGGATTC ATTACTGAAC AACGAGGAGA GAGTTTAGAG GAAGTGGGAG 
AAAAATATTT TAATGAGCTC ATAAATAGGA ATATGGTTCA ATCATTTGAG 
ATTGACCCTT TTAGTAGAAG AGAGGCCTAT CGGATGCATG ATATCATGCT 
TGATCTTATG ATATCTCTGT CTACTGAAGA AAATTTTGCA ACTATACTGG 
ATGGTCAGCA CTGTGCACCA TCATCCAACA AGATTCACCG TTTCTCCCTC 
CAATGTAAAA GTGTGGAAAG GATCACGTGG CTGAGAACCA CTAGTTTTTC 
TCATGCTCGG TCGCTCTCTG TCTTTGGTGA TTTTAACAAG ATACCCCCTC 
TTGTGGACCT TGAAGTTTTA CGAGTACTAG ACCTCTTGAA TTGCTCTAGT 
TTGAAGGATG ATCATATCGA GAATATTGGA AGTTTATTTC AACTGAGGTA 
TGTCAGACTT GGAAATATTA GCAGGATACC AAGGCAAATT GGGAAGCTAA 
AGCTCTTGCA AACACTGGAC CTAAGTGGAA CAGCGGTAAA GAAGTTACCT 
CAATCTATTG TTCAACTGCT CCAATTGGTC CGCCTTTTTC TGCCTTGGCG 
TGTAGAATTG CCAAATGGAA TTGGTAACAT GGAAGCTCTT CAGGTGCTAT 
CAGTGTTCGA TGGCACTGAA AACACATCAG CTATCATTCA AGAGCTCGGT 
AACCTAACCA AACTGAAGGA TCTTGATGTG TACTGGAATT GCAACGACAC 
AGAAAGTGGT CATGAAGTGT ACATCAACCA TTTAGTCAGA TCTCTCTGCA 
AGCTAGGTGG ATTTAACCTT CAGTCTCTTT GTATTCGGAA TATATACCCC 
TGTTCCTTAG ATATCTTGGC TGAATCGTGG TCCCCTCCTC CACGTCATCT 
TCAGACATTT CAGACTGATA TGGGCTGTTA TTTTTCTAGT CTTCCAACAT 
GGATGTCCTC CCTCTCTGAG CTCACCTGCT TAAGAATACA CATGAAGAAG 
GTGGGAGAGG AGGATCTCCA GGTTCTCAAG TGCTTGCCTG CCCTGCTTCG 
TCTCGATCTA TACCCAGGGT ACCCCAAGCA TACTCTCAAA GTTAGCTGCA 
GTGGATTCTC ATGCCTGAAG GAATTTACTT ATGGTCCATC CTATGTTGAT 
CTGGCTTTGA TCTTGCGTCA TCAGTCAACT ATCAAAAATG GACTTGGTAT 
GGGTGTGATG TTTGAAGCAG GGGCTATGCC GAAGCTCCAG CAGCTTGAGT 
TTGGTTTCAA CGCACATGAT ATGGTATCTG CGTATGGAGC TGGACTCGAT 
TTTGGCATCC AGCACTTTGC CTCCCTCAGG CATGTTCGTG TCTTCATCGA 
CTGTAGGGAT GCAAGTGATT GTGAGATGGA GGCTGCACTG GCTGCAACCG 
CTAACTCGGT TTCTCTCCGA GGAAGCTACC ACGTTGAAAT TCGTAGAATT 
TTAAAGAATG TGGAAAATGA TGAGCAGAGC TGACTTGGGA CATCATACAA 
CATGGAACTA AACATAAAGT TTCCAGCCAA AATCGAGATG CCAATATGGT 
TTGGTAATAT ATTAATCTTC CTCTTAAACC GTCTATTGTT ACATTGTTCC 
TTAGCTCTTT CTTTTTCTTG TTTCTGTTTT CAGTTGAAGT AAAATACTAA 
AGTGTTTTGG ATACCC

Gene models with high sequence identity

AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
E-value: 9e-66; Score: 249.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	NB-ARC	7.3e-64
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPanther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2, LRR	0.0000027
HMMPanther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	0.0000027
FPrintScan	Disease resistance protein	6.5e-18
FPrintScan	Disease resistance protein	6.5e-18
FPrintScan	Disease resistance protein	6.5e-18
FPrintScan	Disease resistance protein	6.5e-18
Gene3D	no description	0.000019
superfamily	L domain-like	2.5e-26
superfamily	P-loop containing nucleoside triphosphate hyd	6.9e-16

See the detailed result >

AT3G07040.1

Model type: Protein coding
Short Description: NB-ARC domain-containing disease resistance protein
Curator Summary: Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
Computational Description: RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
Link: InterPro Scan - TAIR