K29614

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29614

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29614

Determination of introduced cDNA(s)

  • J033086I06 - Rice Full-length cDNAs - Original: J033086I06

    full reading [+] show sequence

    Nucleotide sequence: J033086I06 - full reading 
    GGATATTACC CTTCTAGGCT TCAACCTCCA CGAGAACGCC CGCGCGGGGG 
    AGGAGAGGAG AGCGACGAGA CTGAGGTGAC GCGCGCCGCG TCGTCGTCTC 
    GTCGCAGTAA AAAAAAAAAA CAGCAGGGGA GGAGCCCGCA CATGCTTTAA 
    GCCCCACACT CCTCACACCA CCACCGCCCC CCAGATCTCC CCACCACCTC 
    CGCTCCTCGC TTCCCAATTG CCGGCGGCCG GACGGACGCC GACGCGCGCA 
    TTCCGAGGGG AGGCAGGCGG CGCGCGAGAT CGGCGGGGGG TTGCGCGCTG 
    CGGCTGGCTG TACTGTACCT ACCTGCCTAC CGGTGTGGTG GTGTGGTGTT 
    GGTGCCGTGT CCGGGGATGA TGGCGGCGGG CGGCGGCGCC GGGAGCGCAA 
    GATCCGTCGC GTGGGGCGCC TCCGCGCTGC TCGTGGCGGC GCTGCTCCTC 
    TCCGCGCCGA GCGCCACAGA AGCTTATGAT TCGCTGGATC CAAATGGGAA 
    CATCACAATA AAATGGGACG TTATGCAATG GACTCCTGAT GGTTACGTTG 
    CTGTAGTCAC GATGTTCAAT TATCAACAAT TTCGGCACAT CCAGGCACCT 
    GGGTGGCAGC TGGGGTGGAC ATGGGCGAAG AAGGAGGTCA TTTGGTCGAT 
    GGTTGGAGCA CAGACCACTG AGCAGGGTGA TTGCTCAAAG TTCAAGGGCA 
    ACCCACCCCA CTGCTGCAAG AAAGATCCCA CGATTGTTGA TCTGCTTCCA 
    GGCACCCCAT ACAACATGCA AATTGCCAAT TGCTGCAAAG CAGGAGTTAT 
    AAATACATTT AACCAGGACC CATTAAATGC TGCTTCATCC TTCCAGATCA 
    GTGTAGGTCT TGCTGGGACT ACAAATAAGA CAGTTAAGCT GCCTAAGAAC 
    TTTACTCTTA AGGCCCCAGG TCCTGGGTAC ACATGTGGGC GTGCTATGAT 
    TGTTAGGCCT ACTAAGTTTT TCACCAATGA TGGGCGCAGG GCAACCCAAG 
    CTCTAATGAC ATGGAATGTG ACCTGCACAT ACTCACAATT TCTTGCTCAG 
    AAGACTCCAA CCTGTTGTGT ATCTCTCTCG TCATTTTACA ATGACACAAT 
    TGTGAACTGC CCAACATGCT CTTGTGGCTG CCAAAACAAT GGGACTAGTC 
    CTGGGAGCTG TGTAAATGAG AATTCACCCT ATTTACAATC TGCCATCGAT 
    GGCCCTGGCA AATGGACTGG CCAACCTCTT GTCCAATGCA CTTCCCACAT 
    GTGCCCAATA AGAATCCACT GGCATGTGAA GCTCAACTAC AAGGAATACT 
    GGAGAGTAAA AGTCACGATC ACAAACTTCA ACTACCGCAT GAATTACACA 
    CAATGGAACT TGGTCATTCA GCATCCTAAC TTCAACAATA TCACCCAGCT 
    GTTTAGCTTC AACTACAAAC CACTTACTCC ATATGGAGGC AGAATAAATG 
    ATACTGCAAT GTTCTGGGGA GTAAAGTTCT ACAACGATTT GCTCATGCAA 
    GCTGGCCCAC TTGGAAATGC GCAGTCAGAA CTACTTCTGC GGAAGGATTC 
    TATGGCTTTC ACCTTTGACA AGGGATGGGC CTTCCCCCAC CGTGTGTACT 
    TCAATGGTGA CAATTGTGTC ATGCCACCTC CAGATGCATA TCCATGGTTG 
    CCTAATGCAA GCCCTCTAAC AAAACAACCA TTGACGCTCC CGCTCTTGGC 
    ATTTTGGATT GTGTTGGCTA CTTTCCTGGC TTATGCATGA TGGGTGAAAC 
    AAAAAAAAAG TGAGATTCAA GTTGTCAGGT TCCACGGTGT ACAATACAAC 
    ATATCAGTTG TTCATTCACT TACCTGGTTA CATAGAAAAG ATGTTGTCAC 
    GCTGAGGAAA GCTGATACAT GTGTGTTTTG TAAGTTAAAG GGGCAAAATG 
    TATTTCTTGT TTGGTATATA CTGGGCACAG CACTTTGGTG AACTTAGATA 
    CTGCAAATTA GGTAATTACA GTTGCACCTT TTGTATTTTA TAGCAACCCA 
    GAAATTTAAT TGAACTATAT GACTTCCTTT CTTGTAGTAC ATGTATAGGT 
    TCCATAATAA CGTTTTGTAA GATTTTGTGA ACAGAAAGGA TGCTGTTGAG 
    TGAGATCATT TAATTCC

    Gene models with high sequence identity

    1. AT5G60920.1 [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
      E-value: 0; Score: 698.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Glycosyl-phosphatidyl inositol-anchored, plant 2e-105
    HMMPfam Glycosyl-phosphatidyl inositol-anchored, plant 2.7e-73

    See the detailed result >

    AT5G60920.1

    Model type
    Protein coding
    Short Description
    COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
    Curator Summary
    Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
    Computational Description
    COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR