K29614

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29614

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29614

Determination of introduced cDNA(s)

  • J033086I06 - Rice Full-length cDNAs - Original: J033086I06

    full reading [+] show sequence

    Nucleotide sequence: J033086I06 - full reading
    GGATATTACC CTTCTAGGCT TCAACCTCCA CGAGAACGCC CGCGCGGGGG 
    AGGAGAGGAG AGCGACGAGA CTGAGGTGAC GCGCGCCGCG TCGTCGTCTC
    GTCGCAGTAA AAAAAAAAAA CAGCAGGGGA GGAGCCCGCA CATGCTTTAA
    GCCCCACACT CCTCACACCA CCACCGCCCC CCAGATCTCC CCACCACCTC
    CGCTCCTCGC TTCCCAATTG CCGGCGGCCG GACGGACGCC GACGCGCGCA
    TTCCGAGGGG AGGCAGGCGG CGCGCGAGAT CGGCGGGGGG TTGCGCGCTG
    CGGCTGGCTG TACTGTACCT ACCTGCCTAC CGGTGTGGTG GTGTGGTGTT
    GGTGCCGTGT CCGGGGATGA TGGCGGCGGG CGGCGGCGCC GGGAGCGCAA
    GATCCGTCGC GTGGGGCGCC TCCGCGCTGC TCGTGGCGGC GCTGCTCCTC
    TCCGCGCCGA GCGCCACAGA AGCTTATGAT TCGCTGGATC CAAATGGGAA
    CATCACAATA AAATGGGACG TTATGCAATG GACTCCTGAT GGTTACGTTG
    CTGTAGTCAC GATGTTCAAT TATCAACAAT TTCGGCACAT CCAGGCACCT
    GGGTGGCAGC TGGGGTGGAC ATGGGCGAAG AAGGAGGTCA TTTGGTCGAT
    GGTTGGAGCA CAGACCACTG AGCAGGGTGA TTGCTCAAAG TTCAAGGGCA
    ACCCACCCCA CTGCTGCAAG AAAGATCCCA CGATTGTTGA TCTGCTTCCA
    GGCACCCCAT ACAACATGCA AATTGCCAAT TGCTGCAAAG CAGGAGTTAT
    AAATACATTT AACCAGGACC CATTAAATGC TGCTTCATCC TTCCAGATCA
    GTGTAGGTCT TGCTGGGACT ACAAATAAGA CAGTTAAGCT GCCTAAGAAC
    TTTACTCTTA AGGCCCCAGG TCCTGGGTAC ACATGTGGGC GTGCTATGAT
    TGTTAGGCCT ACTAAGTTTT TCACCAATGA TGGGCGCAGG GCAACCCAAG
    CTCTAATGAC ATGGAATGTG ACCTGCACAT ACTCACAATT TCTTGCTCAG
    AAGACTCCAA CCTGTTGTGT ATCTCTCTCG TCATTTTACA ATGACACAAT
    TGTGAACTGC CCAACATGCT CTTGTGGCTG CCAAAACAAT GGGACTAGTC
    CTGGGAGCTG TGTAAATGAG AATTCACCCT ATTTACAATC TGCCATCGAT
    GGCCCTGGCA AATGGACTGG CCAACCTCTT GTCCAATGCA CTTCCCACAT
    GTGCCCAATA AGAATCCACT GGCATGTGAA GCTCAACTAC AAGGAATACT
    GGAGAGTAAA AGTCACGATC ACAAACTTCA ACTACCGCAT GAATTACACA
    CAATGGAACT TGGTCATTCA GCATCCTAAC TTCAACAATA TCACCCAGCT
    GTTTAGCTTC AACTACAAAC CACTTACTCC ATATGGAGGC AGAATAAATG
    ATACTGCAAT GTTCTGGGGA GTAAAGTTCT ACAACGATTT GCTCATGCAA
    GCTGGCCCAC TTGGAAATGC GCAGTCAGAA CTACTTCTGC GGAAGGATTC
    TATGGCTTTC ACCTTTGACA AGGGATGGGC CTTCCCCCAC CGTGTGTACT
    TCAATGGTGA CAATTGTGTC ATGCCACCTC CAGATGCATA TCCATGGTTG
    CCTAATGCAA GCCCTCTAAC AAAACAACCA TTGACGCTCC CGCTCTTGGC
    ATTTTGGATT GTGTTGGCTA CTTTCCTGGC TTATGCATGA TGGGTGAAAC
    AAAAAAAAAG TGAGATTCAA GTTGTCAGGT TCCACGGTGT ACAATACAAC
    ATATCAGTTG TTCATTCACT TACCTGGTTA CATAGAAAAG ATGTTGTCAC
    GCTGAGGAAA GCTGATACAT GTGTGTTTTG TAAGTTAAAG GGGCAAAATG
    TATTTCTTGT TTGGTATATA CTGGGCACAG CACTTTGGTG AACTTAGATA
    CTGCAAATTA GGTAATTACA GTTGCACCTT TTGTATTTTA TAGCAACCCA
    GAAATTTAAT TGAACTATAT GACTTCCTTT CTTGTAGTAC ATGTATAGGT
    TCCATAATAA CGTTTTGTAA GATTTTGTGA ACAGAAAGGA TGCTGTTGAG
    TGAGATCATT TAATTCC

    Gene models with high sequence identity

    1. AT5G60920.1 [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
      E-value: 0; Score: 698.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Glycosyl-phosphatidyl inositol-anchored, plant 2e-105
    HMMPfam Glycosyl-phosphatidyl inositol-anchored, plant 2.7e-73

    See the detailed result >

    AT5G60920.1

    Model type
    Protein coding
    Short Description
    COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
    Curator Summary
    Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
    Computational Description
    COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR