K29621

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29621

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29621

Determination of introduced cDNA(s)

  • J023020I09 - Rice Full-length cDNAs - Original: J023020I09

    full reading [+] show sequence

    Nucleotide sequence: J023020I09 - full reading 
    TGAACCAATC CAATTCCGAA CAAGCAAGGC ACCAAATCCC CCCACCATGG 
    ATCACCGCCT CCTCCTCCTC GGCCTCCTCC TCCTCTCCCC GGCGGTGGCC 
    GCCGCCTCAG TCCCCGGCGA GGAGGAGCCG CTGATCCGGC AGGTGGTCGG 
    CGGCGGCGAC GACAACGAGC TGGAGCTGAA CGCGGAGCGC CACTTCGCCA 
    GCTTCGTCCA GAGGTTCGGG AAGTCCTACC GTGACGCCGA CGAGCACGCG 
    TACCGGCTCT CCGTGTTCAA GGCCAACCTC CGCCGCGCGC GCCGCCACCA 
    GCTGCTCGAC CCCTCCGCGG AGCACGGCGT CACCAAGTTC TCCGACCTCA 
    CCCCGGCCGA GTTCCGCCGG GCCTACCTCG GCCTCCGCAC GTCGCGCCGC 
    GCCTTCCTGC GGGGGCTCGG CGGGTCCGCC CACGAGGCGC CCGTCCTCCC 
    CACCGACGGC CTCCCCGACG ACTTCGACTG GAGAGACCAC GGCGCCGTCG 
    GCCCCGTCAA GAACCAGGGA TCGTGCGGGT CGTGCTGGTC GTTCAGCGCG 
    TCGGGGGCGC TAGAGGGAGC GAACTACCTG GCGACGGGCA AGATGGACGT 
    GCTCTCCGAG CAGCAGATGG TCGATTGCGA CCATGAGTGT GATTCATCAG 
    AACCTGATTC ATGTGATGCT GGATGCAATG GTGGATTGAT GACTAACGCC 
    TTCAGCTATC TTTTGAAATC CGGTGGCCTT GAGAGTGAGA AGGATTACCC 
    CTACACTGGG AGGGATGGCA CCTGCAAATT TGACAAGTCG AAGATTGTTA 
    CTTCAGTTCA GAACTTCAGT GTTGTCTCTG TCGATGAGGA TCAGATTGCT 
    GCCAACCTTG TCAAACATGG GCCACTTGCA ATTGGCATCA ATGCTGCGTA 
    CATGCAAACA TACATTGGTG GTGTTTCGTG CCCGTACATC TGTGGCAGGC 
    ACCTTGATCA CGGTGTTCTT CTCGTTGGCT ACGGCGCATC TGGTTTTGCT 
    CCAATCCGCC TAAAGGATAA GGCCTACTGG ATCATCAAGA ACTCCTGGGG 
    CGAGAACTGG GGAGAGCATG GGTACTACAA GATCTGCAGG GGCTCCAACG 
    TCCGCAACAA ATGTGGCGTG GATTCTATGG TCTCCACCGT GTCTGCCATC 
    CACACCTCAA AGGAGTAGAT TCTGATCAGT AGTCCCCCGA CCATCCTGTG 
    GATGGTTCAC AGTTGGTGAT TCTGATATTA TATATAAGCT AGAACTACGA 
    AATATACTTA GTTTATGCTC CATCTGCGCT GTTATTGCAG TTATGATAAG 
    CAGCGATGAT GTGAAGCTGC AACTGAATGT TTGTCCTAAG TTATATGCTT 
    GGTTTGCTAC GCAATGCTAC ACGCTATTTG GAGGT

    Gene models with high sequence identity

    1. AT4G39090.1 [+] show detail - Papain family cysteine protease
      E-value: 3e-142; Score: 501.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Proteinase inhibitor I29, cathepsin propeptide 9.5e-20
    HMMSmart Peptidase C1A, papain C-terminal 1.7e-102
    FPrintScan Peptidase C1A, papain C-terminal 1.9e-10
    FPrintScan Peptidase C1A, papain C-terminal 1.9e-10
    FPrintScan Peptidase C1A, papain C-terminal 1.9e-10
    PatternScan Peptidase, cysteine peptidase active site 0
    PatternScan Peptidase, cysteine peptidase active site 0
    PatternScan Peptidase, cysteine peptidase active site 0
    HMMPfam Peptidase C1A, papain C-terminal 1.1e-71
    HMMPfam Proteinase inhibitor I29, cathepsin propeptide 2.1e-11
    HMMPanther CYSTEINE PROTEASE 2.2e-219
    HMMPanther Peptidase C1A, papain 2.2e-219
    Gene3D no description 5.8e-96
    superfamily Cysteine proteinases 1.7e-97

    See the detailed result >

    AT4G39090.1

    Model type
    Protein coding
    Short Description
    Papain family cysteine protease
    Curator Summary
    Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R
    Computational Description
    RESPONSIVE TO DEHYDRATION 19 (RD19); CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT2G21430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR