K29621

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29621

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29621

Determination of introduced cDNA(s)

  • J023020I09 - Rice Full-length cDNAs - Original: J023020I09

    full reading [+] show sequence

    Nucleotide sequence: J023020I09 - full reading
    TGAACCAATC CAATTCCGAA CAAGCAAGGC ACCAAATCCC CCCACCATGG 
    ATCACCGCCT CCTCCTCCTC GGCCTCCTCC TCCTCTCCCC GGCGGTGGCC
    GCCGCCTCAG TCCCCGGCGA GGAGGAGCCG CTGATCCGGC AGGTGGTCGG
    CGGCGGCGAC GACAACGAGC TGGAGCTGAA CGCGGAGCGC CACTTCGCCA
    GCTTCGTCCA GAGGTTCGGG AAGTCCTACC GTGACGCCGA CGAGCACGCG
    TACCGGCTCT CCGTGTTCAA GGCCAACCTC CGCCGCGCGC GCCGCCACCA
    GCTGCTCGAC CCCTCCGCGG AGCACGGCGT CACCAAGTTC TCCGACCTCA
    CCCCGGCCGA GTTCCGCCGG GCCTACCTCG GCCTCCGCAC GTCGCGCCGC
    GCCTTCCTGC GGGGGCTCGG CGGGTCCGCC CACGAGGCGC CCGTCCTCCC
    CACCGACGGC CTCCCCGACG ACTTCGACTG GAGAGACCAC GGCGCCGTCG
    GCCCCGTCAA GAACCAGGGA TCGTGCGGGT CGTGCTGGTC GTTCAGCGCG
    TCGGGGGCGC TAGAGGGAGC GAACTACCTG GCGACGGGCA AGATGGACGT
    GCTCTCCGAG CAGCAGATGG TCGATTGCGA CCATGAGTGT GATTCATCAG
    AACCTGATTC ATGTGATGCT GGATGCAATG GTGGATTGAT GACTAACGCC
    TTCAGCTATC TTTTGAAATC CGGTGGCCTT GAGAGTGAGA AGGATTACCC
    CTACACTGGG AGGGATGGCA CCTGCAAATT TGACAAGTCG AAGATTGTTA
    CTTCAGTTCA GAACTTCAGT GTTGTCTCTG TCGATGAGGA TCAGATTGCT
    GCCAACCTTG TCAAACATGG GCCACTTGCA ATTGGCATCA ATGCTGCGTA
    CATGCAAACA TACATTGGTG GTGTTTCGTG CCCGTACATC TGTGGCAGGC
    ACCTTGATCA CGGTGTTCTT CTCGTTGGCT ACGGCGCATC TGGTTTTGCT
    CCAATCCGCC TAAAGGATAA GGCCTACTGG ATCATCAAGA ACTCCTGGGG
    CGAGAACTGG GGAGAGCATG GGTACTACAA GATCTGCAGG GGCTCCAACG
    TCCGCAACAA ATGTGGCGTG GATTCTATGG TCTCCACCGT GTCTGCCATC
    CACACCTCAA AGGAGTAGAT TCTGATCAGT AGTCCCCCGA CCATCCTGTG
    GATGGTTCAC AGTTGGTGAT TCTGATATTA TATATAAGCT AGAACTACGA
    AATATACTTA GTTTATGCTC CATCTGCGCT GTTATTGCAG TTATGATAAG
    CAGCGATGAT GTGAAGCTGC AACTGAATGT TTGTCCTAAG TTATATGCTT
    GGTTTGCTAC GCAATGCTAC ACGCTATTTG GAGGT

    Gene models with high sequence identity

    1. AT4G39090.1 [+] show detail - Papain family cysteine protease
      E-value: 3e-142; Score: 501.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Proteinase inhibitor I29, cathepsin propeptide 9.5e-20
    HMMSmart Peptidase C1A, papain C-terminal 1.7e-102
    FPrintScan Peptidase C1A, papain C-terminal 0.00000000019
    FPrintScan Peptidase C1A, papain C-terminal 0.00000000019
    FPrintScan Peptidase C1A, papain C-terminal 0.00000000019
    PatternScan Peptidase, cysteine peptidase active site 0
    PatternScan Peptidase, cysteine peptidase active site 0
    PatternScan Peptidase, cysteine peptidase active site 0
    HMMPfam Peptidase C1A, papain C-terminal 1.1e-71
    HMMPfam Proteinase inhibitor I29, cathepsin propeptide 0.000000000021
    HMMPanther CYSTEINE PROTEASE 2.2e-219
    HMMPanther Peptidase C1A, papain 2.2e-219
    Gene3D no description 5.8e-96
    superfamily Cysteine proteinases 1.7e-97

    See the detailed result >

    AT4G39090.1

    Model type
    Protein coding
    Short Description
    Papain family cysteine protease
    Curator Summary
    Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R
    Computational Description
    RESPONSIVE TO DEHYDRATION 19 (RD19); CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT2G21430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR