K29622

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29622

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29622

Determination of introduced cDNA(s)

J033046D12 - Rice Full-length cDNAs - Original: J033046D12

full reading [+] show sequence

GATCGCTATT TCCAGTCCGA GGGAGAGGAG CGGCGACGAC AGGCGGCTCC 
CCTCCAGCGC TGGCTCCGGC GAGCCCGCTC CTCCTTCCTC CAAAGAGTCC 
TCCCTCCTCC CTCCGGTAAC AGGTTCCCCC CCCCCGTGCC GCCGCCCCGG 
CATCACCGGC GCCGAAAGGC ATCAACGTGC CGGCGCGGCC CCGGCCGGCC 
GGCCTCCTCC CCTTTGCCTC GCTTTGCTCC CGCTACGATC ACCGGCCGCC 
CGCCCTTGTC CGCCACCCAC CGCCGGTCCG CCGCCTCCTA GGTCCTCTCT 
CCAAACCCGA TCCCCCACTT CCCCCTCCCC AGCGCCGCCT TCCCCCACCC 
CACCCCACGC CGTCGCTGTT CCTCCCCTCC CGGGCTCTTC CGCTCACCTC 
TCCATCGCCT CGGTCTCGCA GCTTCCGCCT CAGTCTCCCC GACTTCCCGT 
TGTCCGTCGC CAACCGAGGT GCCGAGCCAC TGCCGTCATT TGCCCTCCCG 
TCTGCTCAAT CCACGGAGCG GCAGAGGGTC GAGGAACCGC CGCGACAAGG 
CACCACGGCC ACCGCAAGGC AGACGCCGAG GCGCCATCGG CCGCTGGCAC 
CGGGATCCCA TGACCCCTGA CCAGCCAGCT TAATTAATTT TGTGCTCTCG 
AAAACTCGGA CTACTAAACG AAAAATTCCT AGCTACGCCA CTGCCTCCTG 
CCCATTGCCA GAGGCGCGGC GGCGGCGGCG GCGGCGGGGG CGGCGAAGAG 
TCCCGTGAGC GCCTCCTAGA TGGGGCTGCT CAGCATCATC CGGAAGATCA 
AGCGCAAGGA GGAGGAGATG CGCATCCTCA TGGTGGGGCT GGATAACTCG 
GGGAAGACGA CGATCGTGCT CAAGATCAAT GGGGAGGATA CCGGCGTCAT 
CAGCCCCACC CTCGGCTTCA ACATCAAGAC CATCAAGTAC CACAAGTACT 
CATTGAACAT ATGGGATATC GGTGGACAGA AGACTATCCG ATCTTACTGG 
AGGAATTACT TTGAGCAAAC TGATGGACTA GTTTGGGTGG TTGATAGTTC 
AGACATTAGG AGGCTTGATG ATTGCCGTGC TGAACTCCAC AATCTCTTGA 
AAGAAGAGAG ACTAGCAGGA GCTTCATTGC TGGTGTTTGC AAATAAGCAA 
GATATTCAAG GCGCTCTCAA ACCTTCTGAA ATTGCTAAGG TACTCAATTT 
GGAAGCGATG GACGGAAGCC GGCACTGGCA GATCGTAGGC TGCAGCGCGC 
ACACCGGGGA GGGCCTTCTT CAAGGTTTCG ATTGGCTCGT CCAAGACATT 
GCATCTCGGA TCTACGTGCT AGAATGATGT GAACCTCGTT TCTCTGTAGT 
ATTTATGTGC TGGAACGATT GAACCTCATT TCTTATCAAC CTCTTCGTCT 
TGTTCTGTAA CGGTGAACTA TTGGCATCAT GATTTTTGAG CATGATGGTT 
CTGTTTTGTG C

Gene models with high sequence identity

AT2G18390.1 [+] show detail - ADP-ribosylation factor family protein
E-value: 4e-91; Score: 332.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	ARF/SAR superfamily	2.7e-70
Gene3D	no description	1.6e-57
HMMTigr	Small GTP-binding protein	1.8e-15
FPrintScan	ARF/SAR superfamily	3.4e-16
FPrintScan	ARF/SAR superfamily	3.4e-16
FPrintScan	ARF/SAR superfamily	3.4e-16
FPrintScan	ARF/SAR superfamily	3.4e-16
HMMSmart	ADP-ribosylation factor	5.2e-53
HMMSmart	Small GTPase SAR1-type	7.2e-18
ProfileScan	ARF	22.146
HMMPanther	ADP-RIBOSYLATION FACTOR-LIKE 2, ARL2	2e-111
HMMPanther	ARF/SAR superfamily	2e-111
superfamily	P-loop containing nucleoside triphosphate hyd	1.3e-46

See the detailed result >

AT2G18390.1

Model type: Protein coding
Short Description: ADP-ribosylation factor family protein
Curator Summary: Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development.
Computational Description: TITAN 5 (TTN5); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor A1B (TAIR:AT5G14670.1); Has 10006 Blast hits to 10000 proteins in 420 species: Archae - 13; Bacteria - 39; Metazoa - 4544; Fungi - 1627; Plants - 1505; Viruses - 3; Other Eukaryotes - 2275 (source: NCBI BLink).
Link: InterPro Scan - TAIR