K29626

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29626

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29626

Determination of introduced cDNA(s)

  • J013063G04 - Rice Full-length cDNAs - Original: J013063G04

    full reading [+] show sequence

    Nucleotide sequence: J013063G04 - full reading 
    GGGGGGAAAA GCAATGGCGG AAGTAAGAAC TATTGGGTCT CTCCCAGTGC 
    CTAATGTGCA GGCACTTGCA GGAACTTGCA ACGGTTCAGA CGAACAGATT 
    CCTGAAAGGT ACATCAGGAC AGAGGCTACT TGTGAGGAGG TCATCAGCAA 
    CTACCATGGT GACATGGCGA TTCCAATCAT TGATCTCAAT AAGTTGCTTT 
    CTCCACAATC ATCAGAAGAA GAGTGTGTGA AGCTGAGATC TGCCTGCCAG 
    TATTGGGGAT TCTTTCAGCT CATCAACCAT GGAGTGCCAG AGGAAGTGAT 
    TGAAAACTTC AGGAGCAACA TTATTGAGTT CTTCAGCCTG CCACTGGATG 
    CCAAGAAGGA GTACTCACAG CTGCCCAACA GCCTTGAAGG CTATGGACAG 
    ACCTTTGTTT TCTCTGAGGA CCAGAAACTA GACTGGGGAG ACATGTTGTA 
    CCTTCAAGTC CATCCTACCG ATTCAAGGGA CTTGAGATTT TGGCCAGTCA 
    CCCTGCATCT TTCAGGCAAT CCCTTGATCA ATACTCATCG GAGACTAAAA 
    GCCTGTCGCT CTGCTTGTTT GAGTTCCTGG CTAAGGCCGT GGGTGCTGAG 
    CCAGAGTCGC TGTTAGGCAT CTTTGAAGAG CAGCCTCGAG GAATGAGGAT 
    GAACTACTAC CCACCATGCC GGCAATCTGA CAAAGGTAAT TGGCCTGTCG 
    CCGCACACCG ATGTGGTTGG CCTGACGCTG CTGCTCCAGG TGAACGATGT 
    TCAGGGTCTG CAGATCAAGA GGGATGGCAA GTGGTTCTCC GTGGATGCTC 
    TGAGTGGCGC ATTCATCGTC AACATAGGGG ACACACTTGA GATCCTGAGT 
    AACGGAAAAT TCAAAAGTGT TGAGCACAGG GCCATGATAC ATCCAAATAA 
    GGAGCGGATT TCAACGGCAC TATTCCACTA TCCGCGCGAT GATCTGCTGC 
    TGAGCCCTCT GCCTGAGTTT GTGAAAGATG GTAAAGTGAA TTACAGATCA 
    ATCAGTTACA ATGATTTCAT GATGCAGTTT TTTAATCAAA AGCGTGATGG 
    AAGGAATCGG CGGAGAGATT AAAGTTGGAA CAGTAGCCAT CGACTATGAT 
    GCCTGAGATA CTCTCTGAAA TGAGCATGCT TCTGGGTTGT GTCCTACATA 
    TATATTTCTT ACTGTATGTA CTATCTGGAG ATCACAAATA ATGAAATAAC 
    CATATCTTAT GATG

    Gene models with high sequence identity

    1. AT1G17020.1 [+] show detail - senescence-related gene 1
      E-value: 3e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Clavaminate synthase-like 3.4e-09
    superfamily Clavaminate synthase-like 1.2e-31
    superfamily Clavaminate synthase-like 5.3e-43
    Gene3D no description 3.6e-06
    Gene3D no description 6.6e-30
    Gene3D no description 2.6e-38
    HMMPfam Oxoglutarate/iron-dependent oxygenase 1.6e-21
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 1.3e-61
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 1.3e-61
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 2.4e-27
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 2.4e-27
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 1.1e-76
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 1.1e-76

    See the detailed result >

    AT1G17020.1

    Model type
    Protein coding
    Short Description
    senescence-related gene 1
    Curator Summary
    Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.
    Computational Description
    senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR