K29635

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29635

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Original: K29635

Determination of introduced cDNA(s)

  • J013131H13 - Rice Full-length cDNAs - Original: J013131H13

    full reading [+] show sequence

    Nucleotide sequence: J013131H13 - full reading 
    GTCTATCTTT TTCCAGAGCT TTTCCCTAAC CTTAGCCGCC TGCCCGCGCT 
    CGTCCCCTCG CTCCGCCGCC GGCCGCCGCT CCAGTCGGTC GTAGCCGTCG 
    ACTCCGACAT CTCCGGTCAG CGCCGTCGCC TCCAATGGGA CCAAAGCGAA 
    GAGTGGAAGA CCGGCCACCA TCTGCCCGAA GCCGAAGACC CCGGGAAGCC 
    CTTCGTCGCC GTTAAGGCCG AGTTCGCCGT CGCGTTTTGA TCTTCGGCGA 
    AGCCCCGCTG CTCCTCCCGT CGTCGCCCAG CTTCGTCGCC ACCTCCGTTG 
    GGTTCGAAAG GAGGAGCTGC ACCCCGGCCA CCCCTCCGTT GCCGCCGCTC 
    GTTGTCGGAA AGCCGCCGTC GCCGCCGTCC CGATCTCATC GCCGCCTCTA 
    CCTCGCCGCC GGCCGTCTTC CGTTGTCGTT CGTCGTCGTG CCGCCCCTCG 
    CTCATCGTTT CCGTTGTTGC GAAGATTCGT GAGTGCGTCG GAAGTGTTCA 
    AGAAGATTAA TTGAAGACCG ATTATTGCAA GGAGCACACT CTTCGATCGA 
    TGGTGGGCTG AGTGGAAGAA GCATTTATTC CATCTATCAG CCTCAATGTT 
    CTTCACGATA ATCTTCTCGG ACTCGATGCC TCAGACCACA GATTCCTCAC 
    TGCCTTACAC TAGCCAAAGT GGGAAGCCGA TTAACTATGC TGCAGGGATT 
    ATCCCAAATG GTGGTGGACT AGCTCCTTCA GTGATCGGCT ATATGGCCCC 
    CAAGACAACT AATTTACTAT ATGGGCAAAC TCATGAACCG ATTCCAGTTG 
    AAACTTGTAA AAGGAAAAGC ACTAAGCAAT CGGATGTCAA GCCATCGGCT 
    GCTAAACCTC CTGCCGCCTC GAAAAAGGTA GCAAAGAAGC AAAAGTTTGC 
    TGCCGATGAT CTACCTCCTT TGGATCGTGA TGTAGAGGAG GTCCTGGAGA 
    ATGAAGAAAT AGAGGAGGCC ATTGATAATG CTGCTGCTGG CATGAGTGAC 
    ACCAGGGCCT TATCCGCAAG CCCTACGGGT CGAGCTGGGA CACCTCCAGC 
    TGGTACACCA AGTCCCAACA AGACGCCAGA TGCTCCAACA CCGGCCCCTA 
    AAAGTGGTGC AGACGAAGAA GCCAAGGGCT GCTAAGAAGA AGAAATCCAC 
    TCCGCCTCCA TTGCCTCCTC GATCTCCATC TCCTCGTCGG CTAGCATCTA 
    GTGAGCACAC CCCGTCGGCT GTGGACAGTC ATCACTTGGG AACACCAGAA 
    CATCCACCTC TTGTTGTGCC TGTCTTGGCC AATATGTTTT CCTTTGACGT 
    TAAACAGTTC CTAGATGAAG AAGAAGAGGA AACCACCAGT GGAGCCTTGG 
    TCCCTCTTGA TGATGATCTC AAGACCAAAC TCATGGATAT TGCTCAACGG 
    CTAGGGAGTT CCTTGGATTC CTTGGTTACT GGCTGCGGGT CAATCAGGGC 
    CAGGTTTGAA GAGATCCACC ACCAGATCCC AGAAGATGAA GCCGACATCA 
    TTTCCCTGGC TGTATATCTA GAGCAACATC GTTTCAAGCT GGAAAGGGCA 
    CAACAAAGAA TAGCAGACAT GCGCGAGAGA GCTAAACTGG AAGCAACAAT 
    CGAAGCTAAT CGGCTCTTCA TTAATGAAAA AAAAGTCAAG CTTGATGAGA 
    TGATCGTCGG GCTAGGCTCT ACTCAAGTGA ACATAGATCG GCTAAAAACC 
    AGGGAGGCCG AACTAGTAGC TGAGCTTGAA GCGTGCCGAT TTCCCTAGGG 
    CTATTGAAGA ACAAACGTCT AAATTGAGGA AATCCGTCAA GCATCTCTCT 
    GAATTGAGCA AGTCCTTGAA GGTGATTCCT AGTGTCACGC CCGGAAATTC 
    ACTAGTAATT TCCGAACTTA TTTGTACAAA AAACCTTCGT CTAGGAATCA 
    GCCGAGGTAC ACAAACTGAC AATTTAATAT ACAAATCCAT CATAATAATA 
    ACGTTACATA CTTACAAAAG AAAAGAAAAC AGTAGCGGAA TTAATGGTCT 
    AGCGATGGCT CAGCTCCACT CCCACAGGCA GCTCAACTGG GGTATAAGCC 
    AAACGTCTTC TCCTTCGCAA CTTGTCTTCA ACTGAGGTTT GATTGATTAT 
    TGTAAAGTGA GTACATGGAA TACTCCGCAA GCCACACAGC AAATATGCAA 
    GTGCACAAGG ATACCAAATG ATGGCATAAT ATAGGGCTCA TTTGCAAAAG 
    CAGCATTTAG CAAACATTTA GGGGTATTAA AACAGAAGAG TAATTAATCA 
    ATAACTTTTA ATCAACACTG AACAGCACAC CCATGCTGCT CAGGCCCAAC 
    CATCCTGAAC AACCATACCT GGCTATACAG ATCTATCTCC AAACCAGGAA 
    TGTACCATTC CAAACCAGGA GCTAATCAAA TTATTACCAG TTATAGCATC 
    ATTTATTATA GTGAGAAGTG TGAGACTAAT CACGAAAGAC ATTGTTAGAC 
    CCGCCCATAA CCGCGGGCAC GGCTATTCGA ATAGTTTTAC TCTGGCCAGA 
    GGTATACCAC TGTACCCACA AGACACAGCC CCACAACATG TCACCATGCG 
    CCTCAATACC ACCATGGTAC CTCGGAAAGG AGCTGTGACA GTACCCTTCG 
    CACAACACAA TCCACCACAG CGCACCATTC CTGGATCATA ATCACCCCCT 
    TATAAACAAG GCATGGACTT CCCAGCGACC CCCGTGGGCT TATCTCCGCC 
    ACTTCTCAGT CTGGTGCCCC GCAATGAACC ATGCTATACA AAGGTAAAGT 
    CGTTGCCCAT GCTGGCTTGT GGTTGGTACG GTTAATGTTT CACAACCGAA 
    ATTCGTGAAC CGGTCCTTAA TTGTCATGAG CACGACCATC AAAACCATGT 
    GCTCACAACC CACCATTATC AAGTTTTATT TGGCAGTTAA TTAATTCACA 
    ATCACGATTG ACCATCGTGA GCTAGCATTA AATATCCATC ATTAAGTAAT 
    AGTGAAACAT TAGTTATCCC AATTGTGTGC TAATGTTTCT AAGCATGGCT 
    AAGCAATTAT ATCTAATATC TAGCTGAACA AATATATAAG TCCAACTAGT 
    CAAATTATCA CCCAAGGTAT CAAAGAATAG AGTAAGCAAT GCAGAGTGGT 
    CATAAAAAAG GAATAGGTTC ACACCACCCG GTGACATTCC AAAATAAATG 
    CACAGTTGAA ATAAATAGAG AATTTAAATA TAGGATCAAC ATGCTCAAAG 
    GAATTGTGTT TAGGATCTGT GTGACTTGCC TTGCAATAAT CGGTCTTCAA 
    TTAATCTTCT TGGACACTTC CGACGCACTC GCGAACCTTT GAAACGACGG 
    AAACGACAAG CTAACACGC

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RETROELEMENT 1.5e-42
    HMMPanther GAG/POL/ENV POLYPROTEIN 1.5e-42
    HMMPanther RETROELEMENT 2.4e-34
    HMMPanther GAG/POL/ENV POLYPROTEIN 2.4e-34
    HMMPfam Protein of unknown function DUF1409 2.3e-22
    HMMPfam Protein of unknown function DUF834 0.00017
    HMMPfam Protein of unknown function DUF834 0.00000002
    Coil coiled-coil 0

    See the detailed result >