K29646

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29646

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29646

Determination of introduced cDNA(s)

  • J033047I05 - Rice Full-length cDNAs - Original: J033047I05

    full reading [+] show sequence

    Nucleotide sequence: J033047I05 - full reading
    GGCCGCAAAA CCCTTCTCCC GCCGCCGCCA TCGCCGCCGC CATGGACCCC 
    TCGCAGCCGT CCGGGAGCTC CGCCGACGCC TCGGCGTCCT CCTCCTCCTC
    CTCCTCCTCC TCCGCCGTGG AGAATCTCGC CGCGGGGATG GCGGCCATGA
    GCCTCCAGGA TCGGTTCGAG TTGCTGCGGG GGATCGGCGA GGAGTGCATC
    CAGGAGGACG AGCTCATGAA CCTGCTGCAG AAGAAGCCCG TCCCCATCTG
    CTACGACGGT TTCGAGCCCT CCGGCCGCAT GCACATTGCT CAGGGCATTG
    TGAAGACAAT CAATGTTAAC AAGATGGTCA GAGCTGGATG CAAAGTGAAA
    ATTTGGATAG CAGACTGGTT TGCTCAGCTA AACAACAAGA TGGGGGGTGA
    TATAAAAAAA TACAGACTGT GGGACGCTAC ATGATTGAGA TTTGGAGAGC
    GGCTGGTATG AATCTTGATG GTGTGGAATT CTTGTGGTCC TCAGAGGAAA
    TCAATAAGCG TGCAAATGAA TATTGGCCAC TTGTAATGGA CATTGCTCGT
    AAAAATAATG TCAAAAGAAT AATGAGATGT TGTCAGATTA TGGGTCGGAA
    TGATTCGGAT GAGTTGACTG CTGCCCAGAT CTTCTATCCT TGCATGCAGT
    GTGCTGATAT ATTTTTCTTA AAGGCAGACA TTTGCCAGTT GGGCATGGAC
    CAAAGGAAGG TCAATATGCT AGCCAGGGAG TACTGTGATG ACATCAAAAG
    GAGAAACAAA CCAATTATTC TGTCACATCA TATGCTCCCT GGTTTTAAGG
    AGGGCCAAGA AAAGATGTCA AAGAGTGATC CATCCTCAGC CATTTTTATG
    GAAGATGACG AGGCTCAGGT AAATTTGAAG ATAAAACAAG CATTTTGCCC
    TCCCAACATT GTTGATGGCA ATCCATGCTT GGAGTACATC AAGTACATTG
    TTTTCCCTTG GTTTGAAACG TTTGAGGTGG TTCGGAAGGA AGAAAATGGC
    GGTAACAAGA CATTTGCCAA CATGAATGAA CTCATCGCTG ATTATGAGAG
    TGGTGCTTTG CATCCTGCTG ATGTTAAACC AGCTCTTGCA AAAGCGATAA
    ACCAAATATT GCAGCCTATC CGTGACCACT TCAAAAACAA CAGTGAAGCA
    AAAGTTCTGC TCAACACTGT TAAGAATTAC AAAGTAAAAA CGGAGGATAC
    TAGTTCAAGC CCTCAAGCAT CTTAAGAGTT CATGATGGTC TACATGGATA
    TCTTTTAACT TTGTTTACAT TATGCAGTTG TGTGATACAC ATTCTCTTTT
    GGTTAGTGTT ATGTACTTTA AATGTTCATG ATCACCTTAT ACCGTTATAG
    TATGAGAAAA AAGGCAAAAG TTTTGAGTGC AGACAGTGGA AATGCCTTGT
    TGATACCAAA CATTTGTTCT GCTCTGCATC TGCACAACCA CTAAGGTCTT
    ACCTTTGTGG AAAGAAATAT TAACTGGTGA AGCCCTGTTT GGAATC

    Gene models with high sequence identity

    1. AT2G33840.1 [+] show detail - Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
      E-value: 3e-153; Score: 151.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 1.7e-32
    Gene3D no description 5.3e-43
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 1.4e-23
    HMMPanther Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic 1.3e-33
    HMMPanther ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHION 1.3e-33
    HMMPanther Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic 3e-103
    HMMPanther ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHION 3e-103
    HMMPIR Tyrosine tRNA ligase, archaeal/eukaryotic 1.1e-129
    HMMPfam Aminoacyl-tRNA synthetase, class Ib 2.1e-45
    HMMPfam Aminoacyl-tRNA synthetase, class Ib 0.000000000055
    superfamily Nucleotidylyl transferase 1.5e-70
    superfamily Nucleotidylyl transferase 3.3e-18

    See the detailed result >

    AT2G33840.1

    Model type
    Protein coding
    Short Description
    Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
    Computational Description
    Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; FUNCTIONS IN: tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, tyrosyl-tRNA aminoacylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosine tRNA ligase, archaeal/eukaryotic (InterPro:IPR016485), Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic (InterPro:IPR015624), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT1G28350.1); Has 5443 Blast hits to 5419 proteins in 1791 species: Archae - 389; Bacteria - 3121; Metazoa - 323; Fungi - 286; Plants - 124; Viruses - 5; Other Eukaryotes - 1195 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR