K29711

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29711

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29711

Determination of introduced cDNA(s)

  • J033041G24 - Rice Full-length cDNAs - Original: J033041G24

    full reading [+] show sequence

    Nucleotide sequence: J033041G24 - full reading 
    GGTCAGTCCA CCGGTCACCC GCTCGTCAGA GGTAGGTCGC CGTCGCCGCG 
    TCCCCCTCCG CCGCCGGCTC CCGTCGCTCT CCGGTCTCAC GCGCCGCGCG 
    GCCGCAGCAG CAACAACAAC AACAACCCGT TTTGACCGCG CCTTCCTCCT 
    CCGCCGGCCC GCGCGCTCGC CGCGCGCGGC CGCCACGGGT TTCTCTCTAG 
    AAGCCCCGCA CGAATTTTAT CCGTTTTTTC GCATTCTCCC CGCCTCATCT 
    CCTCCTTGAC ACCGACCTCT CCTCCTCGGC TCGGGGAATT CAAACGCGCG 
    GCCTCGCCGG GTGGCCTCGC CTCGCCTCGC CGCGTTCCGA CAGCGAGTGC 
    CCCGCTGGTG CCACTATTTC TTGCCGCCCC AACCCCTCGC ATCGATCCCC 
    CACACCCACA TCTCGCCTCC TCTTCCTCGA TCCTTTGTCT TCTTGCTTAG 
    CTAGCTCTGC CATGGTGGGG AGCTACGCGG CGGGAGGGGG ACGGGGAGCG 
    GCAGTGGCGG CGGTGGCGGA GGGGAAGCTG GACGAGCTGC GGCGGAGGAT 
    GGGGAAGGCG GACGGCGACC TGCTGAGGAT CGTCGGGGTG GGGGGCGGGG 
    CGTGGGGGAG CGCCTTCTGC GCGCTGCTGC AGGACGCGTA CGGGCGGCAC 
    CGCGACAAGG CGCAGGTGCG GGTGTGGCGG AGGCCCGGGC GCGCCGTCGA 
    CCGCGCCACC GCCGAGCACC TCTTCGAGGT CATCAACTCC CGGGAGGACG 
    TCCTCCGCAG GCTCATCCGC CGCTGCGCCT ACCTCAAGTA CGTCGAGGCC 
    CGCCTCGGCG ACCGCACGCT CTACGCCGAC GAGATCCTCC GCGACGGCTT 
    CTGCCTCAAC ATGGTCGACA CGCCGCTCTG CCCGCTCAAG GTCGTCACCA 
    ACCTGCAGGA GGCGGTCTGG GACGCCGACA TAGTCATCAA CGGCTTGCCC 
    TCCACCGAGA CCAGGGAGGT GTTCGGGGAG ATCGGGAGGT ATTGGAAGGA 
    GAGGATCAGA CCCCCCGTGA TCATCTCGCT GGCCAAGGGG ATCGAGGCGT 
    CGATTGACCC CGTGCCCCGG ATCATTACCC CGACACAGAT GATCAGCAAT 
    GCAACTGGAG TTCCATTGGA GAATATTCTA TATCTTGGAG GTCCTAACAT 
    TGCATCTGAG ATATATAACA AAGAATATGC AAATGCTCGC ATATGTGGAG 
    CTGACAAGTG GAGAAAACCT CTAGCTAAAT TTCTGAGGCA GCCTCATTTT 
    ATTGTGTGGG ATAATAGTGA TCTCATCACT CATGAAGTAA TGGGCGGCTT 
    AAAGAACATA TATGCCATTG GTGCTGGTAT GGTGGCTGCA CTAACCAATG 
    AGAGTGCAAC CAGCAAATCG GTTTACTTTT CACTTTGCAC GTCTGAAATG 
    ATATACATCA CCCATCTCCT AGCCGAAGAC CCTGAGAAAC TTGCCGGGCC 
    TTTATTAGCC GATACCTATG TAACACTGCT GAAAGGTCGT AATGCATGGT 
    ATGGGCAGAA ATTAGCTAAG GGTGAACTGA CTCTTGAAAT GGGGGACAGT 
    ATCAAGGGCA AAGGGACTAT CCAGGGTGTC TCTGCAGTCC ATGCATTTTA 
    TGAGCTCTTG AGCCAGAGTA GCTTAAGCGT GACACATCCA GAAGTGAAGA 
    AGCTTGTTGC TCCGGTCGAG CTGTGCCCAA TACTAAAAAC ACTTTATAAA 
    ATCCTAATCA AGAGGGAGCT TGCCACTGAC TCCATCCTCC AGGCAATACG 
    AGATGAATCA ATGTATGATC CACGGGAGAG GATTGAGATG TCTCAGCGCC 
    AGTGTCTTTA CCGACCATCT CTTCTTGGCC TACCTAAAGT AGATATTACC 
    CAGGCTTAGA TCTATTCTTT TTTTTTTCTG CAGATTTGTT TTGAGATTTG 
    CAGGATTCTT TGATGTATTC TTTGCATAGT GGTCCTCAAG ATCCTTCCTT 
    GTGTGCCAAG TGCATCTCGT GTTCGAACAC TGATTCCATT CTCTACTAGA 
    GAATTTGATA ATGAGGTGTT TTGGTTTTT

    Gene models with high sequence identity

    1. AT2G41540.3 [+] show detail - 6-phosphogluconate dehydrogenase family protein
      E-value: 0; Score: 725.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 1.40000045763982e-08
    HMMPfam NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal 1.3e-05
    superfamily NAD(P)-binding domain 2.00000075217465e-15
    HMMPanther NAD-dependent glycerol-3-phosphate dehydrogenase 8.39998014024896e-91
    Gene3D Dehydrogenase, multihelical 2.59999946719014e-16
    superfamily 6-phosphogluconate dehydrogenase, C-terminal-like 4.19999771339602e-20
    FPrintScan NAD-dependent glycerol-3-phosphate dehydrogenase 1.49999977583352e-05
    FPrintScan NAD-dependent glycerol-3-phosphate dehydrogenase 1.49999977583352e-05
    HMMPfam NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal 1.70000000000001e-33
    Coil coiled-coil 0

    See the detailed result >

    AT2G41540.3

    Model type
    Protein coding
    Short Description
    6-phosphogluconate dehydrogenase family protein
    Curator Summary
    Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene.
    Computational Description
    GPDHC1; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding domain (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT3G07690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR