K29714

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29714

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29714

Determination of introduced cDNA(s)

  • J023040A06 - Rice Full-length cDNAs - Original: J023040A06

    full reading [+] show sequence

    Nucleotide sequence: J023040A06 - full reading 
    GACACGCGCA CACGACACGA CGCACCAATG GCGCTCGTCT CCGCCTCCTC 
    CTCCACCACC GCCGTCGCGG CGCTCCCCGG CGCCGCCAGG GCCTCCTCCT 
    TCCTCGGCGG CGCCGGCAGG AGCGGCAGGC TGCTGCTGAG GCAGGCCGAG 
    TCGTCGTCCG CGCGGGCGTC GTTCGCCGTG CGCGCCGCGG CGCCCGACAG 
    GCCAATCTGG TTCCCCGGCA GCACCCCGCC GCCGTGGCTC GACGGCAGGT 
    CGGTATATCC ATCTTACCTC TCTTGCTCGA CGCGTTCACA CACACTCTCG 
    CTCTCTACTG ACATCGTATA CTTGCCATTG ATCTTGGCGC AGCCTCCCCG 
    GCGACTTCGG CTTCGACCCC CTGGGTCTCG GTGAGCCCTC ATCTTCTTCC 
    TAGCTCGTCG CCGGCGACGC CGCCGCCGCC TCTGGACATG CGTACTGACA 
    TATGTGTACA TGCACACACG CAGGATCGGA CCCGGAGAGC TTGCGGTGGA 
    ACGTGCAGGC GGAGCTGGTG CACTGCCGGT GGGCGATGCT GGGCGCGGCG 
    GGCATCTTCA TCCCGGAGTT CCTGACCAAG ATCGGCATCC TCAACACGCC 
    GTCGTGGTAC ACCGCCGGCG AGCAGCAATA CTTCACCGAC ACCACCACCC 
    TCTTCATCAT CGAGCTCATC CTCATCGGCT GGGCCGAGGG CCGCCGGTGG 
    GCTGACATCA TCAAGCCCGG CTGCGTCAAC ACCGACCCCA TCTTCCCCAA 
    CAACAAGCTC ACCGGCACCG ACGTCGGGTA ACACACACCG ACTCACTGAC 
    ACCATGGAAG TGTGTCACGA GCTTGTTCGA AGACGTAATT CAAGTGGCTG 
    AAATACGTGT TCGTGTGTTG GAAACGTAAT GTTCAGGTAC CCTGGTGGTC 
    TGTGGTTTGA CCCGCTCGGC TGGGGCACCG GCTCGCCGGA GAAGATCAAG 
    GAGCTGCGCA CCAAGGAGAT CAAGAACGGG CGGCTCGCCA TGCTCGCCGT 
    CATGGGAGCT TGGTTCCAGG CAGAGTACAC CGGCACCGGC CCCATCGACA 
    ACCTCTTCGC CCATCTCGCC GACCCCGGCC ACGCCACCAT CTTCCAGGTC 
    CGTAGTCCAT AAACACTATT GCATATTAGT TTATCTTGTT AAAATTTTTT 
    ATAACCATTT AGTTGACGTG TAATAAACGA GTGGACGTTC ACCCGAGTGA 
    TTAAAAGAGT TTCAGTTTCC TATACGCACC TCTCCTGCAA CCTGAATATC 
    TCATCAGAGA TACCACATTG ATTCAGTCAC TAATTTGGTG ATGTTTGTGT 
    GTGAATTTCA GGCCTTCACC CCCAAATGAG GAGTTCTTCA GGTGTTGGAG 
    TGTTAGCAAT GGCTGCCAAT GGAGGAAGAT GAAAAGACTG TTCGTCGACG 
    CGACTTACCT CTCTTTTTTG GGATCGGAGT AGGCTGTGAA TGGTGGTGGT 
    GTATTGGGAT GTAATTGTGG ATGGAGCACT GCATGCCTTG TTGATTGTGT 
    ACCTGTACTA TGATGTAACC GATGTAAAAA ACAAGTTGAT ACTCTTTTAG 
    AAGTGAAATT CTCTTCATCA CTGAATCAGA GTTGTGATTT ATGTAGCAGA 
    GTAGTACCGT AGTAGTAGGC TCAGTAATGT TGATGAGATC ATGATT

    Gene models with high sequence identity

    1. AT3G61470.1 [+] show detail - photosystem I light harvesting complex gene 2
      E-value: 8e-52; Score: 46.20

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Chlorophyll a-b binding protein 6.4e-19
    superfamily Chlorophyll a-b binding protein 9.9e-24
    HMMPanther Chlorophyll A-B binding protein 6.1e-39
    HMMPanther Chlorophyll A-B binding protein 4.7e-48
    HMMPfam Chloroa_b-bind 1e-20
    HMMPfam Chloroa_b-bind 5.9e-16

    See the detailed result >

    AT3G61470.1

    Model type
    Protein coding
    Short Description
    photosystem I light harvesting complex gene 2
    Curator Summary
    Encodes a component of the light harvesting antenna complex of photosystem I.
    Computational Description
    photosystem I light harvesting complex gene 2 (LHCA2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR