K29736

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29736

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29736

Determination of introduced cDNA(s)

  • J033093C09 - Rice Full-length cDNAs - Original: J033093C09

    full reading [+] show sequence

    Nucleotide sequence: J033093C09 - full reading 
    GAGCGGGCCC CACACGTCAG CCAGAGCACG AGGTTTATCT CCCACCCTCT 
    CCAATCCCCT CCTCCTCGCC GCCGCCGCCG CCGCCGCAGC GTCCCCGGCG 
    ACCGGAGGCG TGAGATCCCG CCATGGCAGC GGCAGCGGAG GCCGTGACCG 
    AGGTGGATGC CACGAACGAG GAGGGGGAGG AGGAGGAGCA GGTGGTGAAC 
    CCGTGGGAGG TGTCGGCGGG GAAAGGCGGG ATCGACTACG ACAAGCTCGT 
    CGACCAGTTC GGCTGCCAGC GCATCGACGA CGCGCTCGTC GCCCGCGTCG 
    CCCGCCTCAC CGCCCGCCCC CCTCACCGCT TCCTCCGCCG CGGCCTCTTC 
    TTCGCCCACC GGGATTTGAA CGAGATACTG GATTTGTACG AGAAGGGGGA 
    GAAGTTCTAC CTCTACACGG GGAGGGGGCC CTCGTCGGAG GCGCTGCACC 
    TCGGCCATCT CATCCCCTTC ATGTTCACCA AATATCTGCA GGATGCTTTC 
    AAGGTGCCCC TAGTAATACA GCTAACTGAT GATGAGAAGT TCTTATGGAA 
    GAATTTGACT GTTGAGGAAA CTAAAAGGCT TGCCCGTGAA AATGCAAAAG 
    ATATCATTGC TTGTGGATTT GATGTCGAAA GGACTTTCAT TTTCTCTGAT 
    TTTAATTATG TTGGAGGTGC TTTTTATGAA AACATGGTTA AAGTTGCCAG 
    ATGTGTGACA TATAATAAGG TTGTTGGAAT ATTTGGATTC ACCCCAGAGG 
    ATCATATAGG AAAAGTCAGC TTTCCTCCTG TGCAAGCGGT TCCATCATCC 
    CCTTCTTCAT TTCCACATCT CTTCTCTGGG AATGACCAAC TACGGTGCTT 
    AATCCCATGT GCAATAGACC AGGATCCTTA TTTCAGGATG ACCCGGGACG 
    TTGCTCCAAG AATTGGTTAC CAGAAACCAT CATTAATTGA ATCGAGATTT 
    TTCCCTGCTC TTCAGGGGGA GAACACAAAA ATGTCGGCCA GTGATCCAAA 
    TTCTGCAATA TATGTGACAG ATAGTGCTAA AGAAATAAAG ACAAAGGTGA 
    ACAAATATGC GTTCTCAGGT GGCCGGGACT CAATTGAGCT CCATAGAAAA 
    CTTGGAGCTA ACCTTGATGT GGATGTTCCA ATCAAGTACC TGAACTTCTT 
    CCTTGAAGAT GACAATGAGC TCGAGCACAT AAAGAAGGAG TACAAGGAAG 
    GAAGGATGCT GACGGGTGAA GTGAAGCAGC GCCTTGTTGC AGTTCTATCC 
    GAACTGGTTG CGAGACATCA AAGAGCTAGA GCACTAGTGA CCGAGGAGAT 
    GGTCGATGTA TTTATGGCGG CGAGACCTCT TCCCAATATG TTTGGCTGAG 
    TCTGATGTCA AAAACTGCCT GGAGATATTT GCTACTAGCT GGATAAGATG 
    TCCGAAGTGA TCTCTAGAAT TTGGAAGCAG CATTCGTGTG TTTCATGACT 
    TATATTTGTA GGCTGGCCAC TCGTAATATT TGGTGGCACG CTTGATTTTG 
    CAAATCAGTT GAGGATAAAT TTATTTATCT TAAAGCCTGC TCCATCAATA 
    TAGAACCAAC GTCTTTTTGT ATTGAATCAG AAATGTTACA ACAGTTTTGA 
    GCTTAATCAG AACAATCAAG AAACAAACAG CTTTGTCGTC TG

    Gene models with high sequence identity

    1. AT3G04600.3 [+] show detail - Nucleotidylyl transferase superfamily protein
      E-value: 4e-165; Score: 578.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Aminoacyl-tRNA synthetase, class I, conserved site 0
    FPrintScan Tryptophanyl-tRNA synthetase, class Ib 3.9e-22
    FPrintScan Tryptophanyl-tRNA synthetase, class Ib 3.9e-22
    FPrintScan Tryptophanyl-tRNA synthetase, class Ib 3.9e-22
    FPrintScan Tryptophanyl-tRNA synthetase, class Ib 3.9e-22
    HMMPfam Aminoacyl-tRNA synthetase, class Ib 4.1e-23
    HMMPanther Tryptophanyl-tRNA synthetase, class Ib 2.9e-129
    HMMTigr Tryptophanyl-tRNA synthetase, class Ib 8.6e-116
    superfamily Nucleotidylyl transferase 1.4e-102
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 4.2e-104
    Gene3D no description 5.7e-47

    See the detailed result >

    AT3G04600.3

    Model type
    Protein coding
    Short Description
    Nucleotidylyl transferase superfamily protein
    Computational Description
    Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: nucleotide binding, tryptophan-tRNA ligase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, tryptophanyl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tryptophanyl-tRNA synthetase, class Ib (InterPro:IPR002306), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 2274 Blast hits to 2202 proteins in 759 species: Archae - 483; Bacteria - 800; Metazoa - 304; Fungi - 267; Plants - 65; Viruses - 5; Other Eukaryotes - 350 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR