K29806

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29806

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29806

Determination of introduced cDNA(s)

  • J033143J20 - Rice Full-length cDNAs - Original: J033143J20

    full reading [+] show sequence

    Nucleotide sequence: J033143J20 - full reading 
    GAATTCTGGG CCTAGGCATC TCCCCTCTTC TCGGGCAAGA ACCCTAGCCA 
    CCTTCGCCAG TCTCCGGCTC GAACGCGGCC ACGGCGAGGC TGCGCGGCCA 
    GTGATCTTGC GGTCTAGGCG GCGGCGGCGG AGGAGGAGGA GGAGGAGGAG 
    GCGTCGAGAT GGTGGTGGCA TCCGGTGGAG GGCGGAACGC GTGGGCGAAG 
    GAGATGACCA TCCGCCGCAG GATTACCAGC ATATTCAACA AGACGCGGGA 
    GCATTTTCCG TCCCTGAAAG ATTACAACGA CTATCTTGAG GAAGTCGAGG 
    ATATGACTTT CAACCTGATC GAGGGGATAG ATGTCGAGGT GATTGAAGCT 
    AAAATTGCCA GATATCAACA GGAAAATGCT GAACAGATAT ATTTGTCCCG 
    GGCTAAAAGG GCCGAAGATC TTGCTGCCGC ACTTAAAGCA AGCAGAATGA 
    ACCCTGGCAA GGCTGGTGCC AATGACACGG CTGCTGGAAG CTCTCAGGGC 
    ATTAGTAGTG GCGCGGGAGT TCAGGAAGGC CAGTATGCGC CTGCTGCTGT 
    TCCCGGTGGG CTAGCTCAGC CTCGGCCAAC AGGGATGGCC CCTCAACCGA 
    TCGGCGGTTC ATCGGTTCCT CTTCAAGGAG ATGATGAGGA GACCATGAGG 
    CTACGTGCGG AGAGCGGGGC TCGAGCTGGT GGATGGTCCA TCGAAATGTG 
    CAAGAGAAGA GCATTGCAGG AAGCGTTCAG TACCATATTC GTCTGACGGT 
    CAGATTAGAC GCAAGAGCAC CTAACATGTA GGATGCCTGA TAATTTTGTG 
    GACATCCTTT GGATGAGATG ATGGGTTTTT ACTGACCGAT TGACATGGTT 
    GGCTTGGTCC AAACATATGA ATTTTGAGCA CTTGGGATTG AAGCTCCAAT 
    CATCGTCAAG TGGCCTGGTG ATTGGAAAAG ACCATCCCTT CTCATTCTCA 
    GCAATCTGGA AAATTGTGCA TTTCTGTTTT TGTTCATAGC ATATGAATGG 
    TGATTGGAAA AGACCATCCC TTCCCATTCT CAGCAATCTG GAAAATTGCG 
    CATTTCTGCT TTTGTTCATA GCATATGAAT GTTGTGTGCT TGCCTGACTA 
    AATTATCAAA AGCATATTGT G

    Gene models with high sequence identity

    1. AT4G30820.3 [+] show detail - cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembl...
      E-value: 3e-37; Score: 152.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TRANSCRIPTION/REPAIR FACTOR TFIIH 4.2e-20
    HMMPanther Cdk-activating kinase assembly factor (MAT1) 4.2e-20
    HMMPfam Cdk-activating kinase assembly factor, MAT1 7.2e-26

    See the detailed result >

    AT4G30820.3

    Model type
    Protein coding
    Short Description
    cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related
    Computational Description
    cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cdk-activating kinase assembly factor (MAT1) (InterPro:IPR004575), Cdk-activating kinase assembly factor, MAT1 (InterPro:IPR015877); Has 365 Blast hits to 365 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 145; Plants - 58; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR