K29816

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29816

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29816

Determination of introduced cDNA(s)

  • J013098E18 - Rice Full-length cDNAs - Original: J013098E18

    full reading [+] show sequence

    Nucleotide sequence: J013098E18 - full reading 
    GAATGGAGAG AAGAGGCGCC GGTCCCCCGT TGGACCGGAG CTCGCGCGCG 
    GGAGCCCGAG CCAGCCGCCG CTTTGACCTA TAAATAAGAG GAGGAGAGAG 
    CTCGGGGGTT GGACTGGGTG AAGAAGGGGC AAGGAAGGAA GGGGAGGGGA 
    GGGGTTGGGG CGATGGCTTG GTGGAGCTGC TTCGGCTGCG GCCCGTCGAT 
    CGCCGCCGAA GGCGAGGTCC GGCTGCCGGA GCCGTTCCAG CTGCCGGCGC 
    CCTTGCCCGA CTGGCCGCAA GGAGGAGATT TCTCTAAGGG CACAATATGC 
    ATAGGCGAGC TCGAGGTTGC AAGTATTACC AAATTCCAGA GTATATGGAG 
    CTGCTCAGGA GCTACATTCT ATGAGCCGCA AGAAATCCCT GATGGTTTCC 
    ACTGCCTTGG GCACTATGCC CAACAGAATG ACCGACCTTT ACAGGGATTT 
    CTTCTTGTGG CAAGGGAAGC GGCTAGCTGC CAATCGATCA ATCTCAAGCC 
    TGCTCTTGAG AAACCATTAG ATTACACCCT TGTTTGGACT AGTACTGACT 
    TGAATGATGA TGACAATAGT GATTGTGGTT GCTTCTGGTC ACCATCACCA 
    CCGGATGGTT ATGAAGCTCT CGGCTATGTG GTTACTAGAG GACCGAAGAA 
    GCCCTCATTA GATGCAGTTC GATGTGTGCG GGGTGACCTC ACTGATGAAT 
    GTGAAAACTT TAAGTCAATC ACAAATATGG GAGGTAATTG CTACATCTGG 
    AATACAAGGC CTTGCCACCG AGGGATGGCA GGAAGAGGGA TACCTGTTGG 
    TACATTCTTC TGTGGAACAG ATACAGAAGA ATCAGACATT CCCTGCTTGA 
    AGAACTTTGA TTCAAGTTTG AGTTCCATGC CTAATTTAGA GCAGATCAAA 
    GCACTGATCG AGCACTATGG ACCAACTGTT TTCTTCCACC CGCAAGAGAT 
    CTACTTACCA TCGTCAGTCT CTTGGTTCTT TGAGAATGGA GCTACGCTCC 
    ACAAGAAAGG TAAAGAAATG GGAGATGTAA TTCTTGCTAG TGGTTCGAAC 
    CTTCCTGCTG GTGGGACAAA TGACGGTGAG TACTGGATTG ATATTCCTGA 
    TGGTGATAGG AATGAATATG TCAAAGCTGG TAATCTGAAG AGTGCTGAGC 
    TCTATGTGCA TATTAAGCCG GCTCATGGAG GAACTTTCAC TGACATTGCG 
    ATGTGGGTGT TCTGCCCATT TAATGGGCCA GCAACAATAA AGGTCGGATT 
    TGCTAGCTTT GCTCTACAGA AAGTCGGCAG GCATACTGGT GACTGGGAGC 
    ATTTCACCCT CCGTATAAGT AACTTCTCAG GAGAGCTCTC ATCTATCTAC 
    TTCTCACAGC ACAGTGGAGG CGACTGGGTG GATGCATGTG ATCTGGAGTT 
    CATCTCAGGA AACAAAGCCA TCGTTTACTC AGCGAAGGAT GGCCACGCAA 
    GCTATGCGCA CCCTGGATGT TATCTGTTGG GATCTGAGAA GGCTGGTGTT 
    GGGGTAAGAA ACGATGCAGC ACGAAGCGAT ATTTTGGTCG ATTCGAGCAC 
    AAGGTATAAG ATCATCTCTG CGGGAAATCT GGGAGATGCC GTTATCGAAC 
    CATGCTGGCT GCAGTACATG AGAGAATGGG GCCCGACCGT GGAATACAAC 
    TCACGGTCGG AGATAGACGC TGTGCTTAGC TTCTTGCCCT TCTTTCTTCG 
    GTTCACAGCT GAAGCAATAC TGAACAGTCT TCCGGTGGAG CTGTACGAGG 
    AGGAAGGACC AACTGGACCA AAGGAGAAAA ACAACTGGGA AGGCGATGAG 
    AGAGGCTAGA AGATGTTTCC AACTTCAAAT ATATGCTTCA TAATTTGTTC 
    CAGAATCCAG ATAGCTCTAT AGATATGTAC CCTAAGGGTG CTGTAATAGT 
    GATATTGGGA TCGAACGATC GATATGCTTT GCCAAGGCAT TTCAGTTCAT 
    AGAGTTTGTA GGTGAAATGC TGGCAAAGCT GAAGGTTGAA GAGGTAATCA 
    CGTTATGTTG TCCTGTTTGA TCATCTGGCC TGTTTGTACC TTGTGTCAGC 
    TATAACTCTG TTTCTAAGAA CCATAAACTA AAGCCGACAT AGTCGACAAA 
    AGCTACTGAC CATGTGAGCC TCTCTTTCCT

    Gene models with high sequence identity

    1. AT3G04350.1 [+] show detail - Plant protein of unknown function (DUF946)
      E-value: 0; Score: 640.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PRE-MRNA PROCESSING-RELATED 3e-280
    HMMPanther PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 3e-280
    HMMPfam Protein of unknown function DUF946 1.4e-253

    See the detailed result >

    AT3G04350.1

    Model type
    Protein coding
    Short Description
    Plant protein of unknown function (DUF946)
    Computational Description
    Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G18490.1); Has 389 Blast hits to 369 proteins in 101 species: Archae - 0; Bacteria - 21; Metazoa - 15; Fungi - 143; Plants - 203; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR