K29823

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29823

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29823

Determination of introduced cDNA(s)

  • J013006O19 - Rice Full-length cDNAs - Original: J013006O19

    full reading [+] show sequence

    Nucleotide sequence: J013006O19 - full reading 
    GGTCCACACA TGGCTACCAC CGCCGCGACG ACCATGGTGG CGGCGGTGCA 
    CCACCCCCGC CCCTGCTTCC GCGTGCGCGC CGCCTGGGAC ATGAACCCGA 
    GCGCCTCCCC CAAGCCCAAG GCCAAGCCCC CGCCTCCCCC GCCGCCGCCG 
    TTGCCGACCG CCCCCGCCCC CACCCACGCC GACCTCTTCG CCCGCCACAG 
    CAACAGCGAG GGCCAAGTGC CAAAGAAGAC CACAAGTATG GGATTTGAAA 
    GGTGGTGGTT ACCACCTCCG CCAGAGGTGA AGAAGCCCCG TTCGCTCTAC 
    AACGCTGCAT CATTGGCGTA CTTGGGGGAC TGCATATATG AACTTTATGC 
    TCGGAGACAT TTCTTCTTTC CACCACTGAG CATCAATGAC TACAACAAGC 
    GTGCAATGGA TGTCGTGAAA TGTGAATCAC AGGACCTTCT GCTGCACAAA 
    CTTCTTGGAG AAGATTTTCT AACTCAAGAA GAAAGGGACA TACTTCGTTG 
    GGGAAGAAAT ATTGTTAGCA GCAAGACACG TACCAGAAAA CGTGCTGGAA 
    TTGCAGTTTA TAATCGAGCA TCTTCACTTG AGACACTGAT TGGATATCTT 
    TACCTCACAA ATTTCAAGCG CTTGGAGCAA TTGATGTTCC AGTTAGGATT 
    TACAAGTGGT GCTTCCTCAC ATCATATTGC AGATGAGCTA GTCTCAGGCT 
    TTAAGAAAAA GAACTCCACT TCTGTACAAT CTCAGCAACA AGCAGCGCAG 
    TGAATAGTTT CTGTATTGCA GCAAACATGG TATGATCTAA ACAATAGTTA 
    TCTGGTGACG ACAACCAGCA CAAAAATTCA TTTAGTTTTG GTGTATGACA 
    TCCAAAAGTG GTTGCTCAAT GAATGAATAG CAATTACCGT TTGTCTGTCA 
    AACAAGTATC GAGTGAATTG AGCAATGTAC ATGTATGCAA ATATCATTCA 
    GTGCAAGAAA ATGGTGTCAC TTCCAGGAGG GTGTGGCGGT TCTGATCTGT 
    AGATTCTGAG GTGGCAAGCC GTTGTGTTAT TACTACTCAT TAGGTTGATA 
    TAGGTCGTGG TATCTTTGAC ACCTTGTGTA TGAAGGAGCT GCGAAACTGC 
    AAGATATGCT GAATGATTTG ATGCAGAGTT TTAGCACGAC TTCAGAATTA 
    ACCTGTTCTA TGTGCTTCAT GGATTCAGTG CACTACCATT ATGAGACAGA 
    TGCCTTTGCT TTGCTGTTTG TTGTGATCTA ATGTAAACAA CACAATGTGG 
    AAGTATTTGA GGCCATAAGA AAAGTGGCAG AGTTGGT

    Gene models with high sequence identity

    1. AT3G13740.1 [+] show detail - Ribonuclease III family protein
      E-value: 6e-56; Score: 215.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G13740.1

    Model type
    Protein coding
    Short Description
    Ribonuclease III family protein
    Computational Description
    Ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT1G55140.1); Has 1542 Blast hits to 1541 proteins in 746 species: Archae - 0; Bacteria - 1385; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR