K29843

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29843

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29843

Determination of introduced cDNA(s)

  • J023068M23 - Rice Full-length cDNAs - Original: J023068M23

    full reading [+] show sequence

    Nucleotide sequence: J023068M23 - full reading 
    TTGGGTAGAG AGGGCCATGG AACTAAATAT TCCACTTGAC TAGAGCCCGA 
    TCGAGAGGAA CAGAAAGAAG GGAAATAGGA GCTATGGTAA GCTGCAGGGT 
    GTGTGTCACC GGGGCCAGCG GCTACATCGC GACCTGCCTC GTCAAGAAGC 
    TCTTGGAACG AGGCTGCATC GTCCATGGAA CATTGAGAAA TCTTGGAGAT 
    GAGAAGAAGG CGGCGCCGTT GAGAGAGCTC CCCGGCGCGG CGGAGCGGCT 
    GGTGCTGTTC GAGGCGGACA TGTACGACGC CGACACCTTC GAGCCGGCCA 
    TCGCCGGCTG CGAGTTCGTC TTCCTCCTCG CCACCCCGTT TCAGCATGAA 
    CCCAGCAGCA AGTACAAGAA CACCGCCGAG GCGGCCGTGG ACGCGATGCG 
    CATCATCTTG AAGCAATGCG AGCGATCAAA GACGGTGAAG CGCGTCATCC 
    ACACTGCCTC CGTCACCGCC GCCTCGCCGC TCCGGGAGGA CGGCGGCGAG 
    GGGTACAAGG ACTTCATCAA CGAGTCCTGC TGGACTCCAC TCGGCCAGTC 
    TCACCCATAC AGCAGCGACA TGTCGGCTAT AAATCAAGTT TACGCATCAT 
    CCAAAACGCT ATCCGAAAAG GCGCTGCTGA GGTACAACGA GTCCGAGAGC 
    AGGGCGTTCG AGGTGGTCAC CCTGGCGTGC GCGCTCGTCG GCGGCGACGC 
    CGACACCACC CGGCTCTACC ACCTGCTCAG CGTCCCGGCG ATCGTGGCGC 
    CGCTCATCGG CCAGGAGTCT TACCACGGCG GACTCAAGTA CCTGCAGGCG 
    CTGCTCGGCT CCGTGCCGCT GGCGCACATC GACGACGTCT GCGACGCGCA 
    CGTCTTCTGC ATGGAGCAGC CGTCCATCGC CGGCCGTTTC CTCTGCGCCG 
    CCGGGTACCC CAACATGAAG GACTTCGTCG ACCACTTCTC CGCCAAGTAT 
    CCGGAGATCA CGATCAAGCT CCGAGAGGTG GTAGGGGAGG GCGTGAGGGT 
    GGGAGCTGAT ACAAACAAGC TCACGGATTT GGGGTTCAGA TACAAGTATG 
    GGGTGGAGGA GACGCTGGAA GGTAGTGTGG AATGCGCCAA GAGAATGGGA 
    TTGCTGTGAT ATGCGGCTGT TGCGTTGCTC GTTGGTGTTT AGTAATTTGC 
    GTATGTGTAG TTGGCACCGA TTTGGACCCA GATGTGTTTG TGCCTTTATG 
    CTAAAAAAAG GTTAATTAGA TCC

    Gene models with high sequence identity

    1. AT4G27250.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 8e-42; Score: 168.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 7.8e-21
    HMMPfam NAD-dependent epimerase/dehydratase 1.3e-16
    superfamily NAD(P)-binding domain 1.9e-41
    HMMPanther NADHP HC TOXIN REDUCTASE 1.8e-129
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 1.8e-129

    See the detailed result >

    AT4G27250.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: dihydroflavonol 4-reductase (TAIR:AT5G42800.1); Has 11174 Blast hits to 11160 proteins in 1934 species: Archae - 191; Bacteria - 4752; Metazoa - 248; Fungi - 837; Plants - 2457; Viruses - 63; Other Eukaryotes - 2626 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR