K29916

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29916

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29916

Determination of introduced cDNA(s)

  • J033150O11 - Rice Full-length cDNAs - Original: J033150O11

    full reading [+] show sequence

    Nucleotide sequence: J033150O11 - full reading 
    GAGGCGTAGC TAGCTAGCTT CGTTAGTTCA GCCACAGAGA GAGTACATCG 
    TAAGTGTTCA TATAGATCAG CTGGCAGAGA ACAACATGGC CGGCAGAGTG 
    ATCGCACAAG GATATAGGGT GGTGGATGAG GAGCGCCACG CTGTAAACTA 
    TAGGTCGAGT GTGTGGGGTG ACTACTTCAT TAGGAACCCA ATACTGCCTC 
    ATAACTATCG AAATCACTGG AGTGGATGAC GGAAAGATGT GATGACCTAA 
    TAGTTGAAAC AAGGGAAATG TTTGTAGACA TCCTCAATCC ATTTGCAAAA 
    ATGAAGCTTA TCGATGCACT TCAACGTCTT GGAGTATCTT ATCATTTTAA 
    AGAAGAAATA GATAACTCCC TAGAAAGTCT AGTTTCTGTG AAGTTTGCGA 
    ATGATGATTT CCATGCGATC TCCCTTCAAT TCCGGTTGCT AAGACAGCAG 
    CGGCGCTACA TGCCATGCGA TGCATTTAAA GAATTCATTG ATAAACAAGG 
    AAACTTAAAC GGAACCCTAT GTAGTGATAC AAGAGCATTA CTTGCTCTAT 
    ATGAGGCAGC ACATCTTGGA ACTCCTAATG AAGAAATTCT CCGAGAAGCA 
    CAGGATGAAG AGGTTAGAGG CCAGACTTTA CATACCATTG TATGAAGAAG 
    ATAAGGAGGA GTGCAACGAG ATGATACTTG AGCTAGCAAA ACTTGACTTT 
    TATTTATTGC AGCGACTTCA CCGGGAAGAA GTCAAAGAAA TATGCGAGTG 
    GTATCATGGG CTAGAGTCCC CACGTGAACT ATTCTATGCA AGGCATAGGC 
    CTGCAGAAGC ATATTTTTGG GCGTTGGGTG TGTATTATGA ACCAGAATAT 
    GCAAAGCCTA GGAAGTTGCT AGCGAAATTC ATAGCAACTA TTACACCATA 
    TGATGATACT TTTGACAATT ATGGACTCTG GAAAGAGCTT CAACCATTTG 
    CTGACGTGAT GCAACGGTTT TGTTCCACAT CCCGATCACA CTTTGAGAAA 
    ATAATATTAA GCAAGTTTCA GCTTTATACT TATCAAATAT AATTTAAAGT 
    TAGGATTGAT TTAAGTTGTA ATTTTCATGG TCCACACATA TGCATTGACA 
    TAACTAAGTC AATGATATCT CTATGAATAT CTTGTACATG TTTCCCCATG 
    ATAATTTCTT ATAGGTGGGA TGAAAAGGGT GCTGAGCAAC TTGGAAGATG 
    TTACAAGGAA TATGCTCAAT TTATGTTTGG CACCATGAAT GAGATTGAGG 
    GTGCACTCCC AAAAGGAACA CCAAGGAAGA ATGTTAATGT TATCAAAGAT 
    ATAGTGTTAC AGAGGAGGTT ATGATATGGA TGTCAGGATT TCCTCAAATT 
    GTCAAGGATT CATGTATTGT TTCTCGACTA ATGGATGACA TTGTTGCTCA 
    TGCGTTTGAG ACCGAAAGGA ACAATGTTGC TACCGCTGTA ACTTGCTATA 
    TGAAAGAGTA TGACAGCACA AAGGAGGAGG CCATTAAAGC ACTGTGGAAT 
    GATGTGGAAA ATGCATGGAA AGATATGAAC GAGGAGTACC TAAAATTGAC 
    CTCAATTCCG TCTTCCTTGC TTATCCAGGT TATTAACCTT GCACGCATGA 
    TGGAAACAAT GTACAAGAAA ATTGATGGAT ATACTGATTC TGCAATACTG 
    AAAGAATGGA TATCCTTGTT GCTTGTTCAG CCAATAACAC TCTAGGTTTC 
    CATCATATGA CTTCGCTTTA ATTTGATTTT GATCAGAGTG TCTCTATTAT 
    GAATAATCGT GTATCCAAGC TTGCTTCGGA TGATCCTATG TAAGCAGCTC 
    ATTGCTGCTT TATTGTCATT TTCCTTGTAG TGATGTTTGT ATTTCTTCAT 
    TTCAATCTCG ACATTGCTGC CTTATGCAGA GGAGTGTTTG TAGCATGAAT 
    TGCTAAAAAT AATATTTGGC ATTTGATGTG ATCTTATT

    Gene models with high sequence identity

    1. AT5G23960.2 [+] show detail - terpene synthase 21
      E-value: 3e-40; Score: 69.70

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.6e-33
    Gene3D Terpenoid synthase 6e-36
    Gene3D Terpenoid synthase 1.8e-36
    HMMPfam Terpene synthase-like 4.5e-39
    HMMPfam Terpene synthase, metal-binding domain 0.0000000000000074
    HMMPfam Terpene synthase, metal-binding domain 6.8e-29
    superfamily Terpenoid cylases/protein prenyltransferase alpha-alpha toroid 7.2e-36
    superfamily Terpenoid synthase 1.6e-40
    superfamily Terpenoid synthase 7.5e-40

    See the detailed result >

    AT5G23960.2

    Model type
    Protein coding
    Short Description
    terpene synthase 21
    Curator Summary
    Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.
    Computational Description
    terpene synthase 21 (TPS21); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT3G14490.1).
    Link
    InterPro Scan - TAIR