K29929

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29929

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29929

Determination of introduced cDNA(s)

J023093E18 - Rice Full-length cDNAs - Original: J023093E18

full reading [+] show sequence

GGTCCCCCCT CCTCCTCGTC GTCGTCGTCT CACCCAACGA ACTTTTCCGG 
CGAACTCCCC GACGAGATCG ATGGCCGCCG GCGAACGGCA ATCGAACAAG 
GAGTACTAGG ACGCCCTTCT TTGTTGTTTC TTCTCGGCAA GATCAGTTGG 
TTGGCACCAC CTGCCATTCT TGGTTTGGAA GTGTGGGAGG GAGGGGTTCG 
GTTGGTCGAT GCCGTTGCGG TTGCCGTGCG CGATGGAGAC GAGGCCACCG 
CGGGCGGCGG CGCCGGCGCC GGCGAGGGTG TCGAGGTTCC GGAGGCTGCT 
TGTGCGGGTG TCCGCGGAGC CGGAGCGGGC GGGCGGCGGC GGCGGCGGGG 
AGGTGAGGGA GAAGGAGGAG AAGGCAGCGG AGATGGAAGT GGGGTCGGTG 
GGGTTGGACC GGATGGTGCT CAGCTTCATG GAGGATTCCG CCGCCGCCGC 
CGTGGAGCGG CCCCCGCGTG GCCGCTGCGG CAGCTGCTTC AACGGCGGCG 
GGGACGGCAG CGACGACGAG GAGTTCGACT TCCTCCCCTC CGACTCCTCC 
GCCACCGCCG CCGCTTCGGC CGCCGCCGCC GCCGGCGACG CCCTGGACGC 
GTTAAAGGGC TTGGTGCAGA GCGCGAGCAT GGCGGAGAGG AACCTCCTCG 
CCGACGCGTC GAGGATCGCC GAGAGGTGCC GCAAGGGCGG CAAGAAGAAG 
GCCGACGTCC GCTGCGCCGT CGCCGACGGC CTCGCCGCCC TCGGCTACGA 
CGCCGCCGTG TGCAAGTCGC GGTGGGACAA GACCCCCTCC TACCCCGCAG 
GTAAACTAAA CCTCGCCCCC AATTCGATGC TGCTGAATCG CCGGCGCTGA 
CCGGCGGCGA CGGTGGGCGG CGCAAACCTT GTGCAGGCGA GCACGAGTAC 
ATCGACGCGG TGGTGGCGGC GGAGACTCGG CTGGTGGTGG AGGTGGACTT 
CCGGTCGGAG TTCGAGGTGG CGAGGTCGAC CAAGGCGTAC CGCGCGGCGC 
TGCAAGCTCT CCCGCCGCTG TTCGTCGGGA CGCCGGACCG GCTCGGGCAG 
ATCGTCGCCG TCGTGGCGGA GGCCGCGCGG CAGAGCCTGA GGAAGAAGGG 
CCTCCACGTC CCGCCATGGC GGAAGCCGGA GTACATGCGC GCCAAGTGGC 
TCTCCCCGCA AGTCCTCCGC TGCTCCGACA AGCCGCCGCC GCCGCCGCCG 
TCGCCCCCGC CCACGCCGGT ATCGCTCTCC AGCTTCTCCG GCGAGTTCGA 
GCTACGCTTC GACGCCAAGA CCCCACCAAA CCTCAGCGCC ACCGCCGCCG 
GCGACGACAA CGACAACGAC AACGACGACG AGGTCGAGGC GAAGAAGATT 
ACGATGGTGG TGTCCCCATC GCCGTGGCGC CCGGTGGAGC CGGAGGCGGC 
GAGCAAGAAA AGGTCACCGC CGCCGCCGCC GCGGCGCCCC GAGGGGAAGG 
TGGTGACCGG GCTCGCCGCC GTGCTCTAAC CGCGGCGAAG AACTCACTTT 
ACTACACTAG CTAATTAACC AGCTCTCCTC CCTCGCCAAT TTTCTCTGTT 
TTTTTTTTCA TTTTTCCATC GCCGCTTTGA TCCGTCCGAG GCTTAGCTCA 
TGGTGTTTTC TCAGTTTTTT TTCCGATTTT TTGGAAAAAG ACATTTACAG 
AAAACACCTC CATTTTTCTT TTTTCTTTTT TTTATTCTAG AACAAATTTT 
GGTTTCCACA AAAGGGAAGT GCAAGGAGCA GTAGCTGTGA CAGCTTCTAG 
GCCCCCTATT GTTGAGAAGA GGATGAAAAA TGAAAGTATG AACTAGAGAT 
ATGCAACATT ATCTGGTT

Gene models with high sequence identity

AT3G22970.1 [+] show detail - Protein of unknown function (DUF506)
E-value: 4e-38; Score: 55.10

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Protein of unknown function DUF506, plant	6.8e-39
HMMPfam	Protein of unknown function DUF506, plant	2.7e-39
HMMPfam	Protein of unknown function DUF506, plant	5.5e-15

See the detailed result >

AT3G22970.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF506)
Computational Description: Protein of unknown function (DUF506) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT4G14620.1); Has 397 Blast hits to 394 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 395; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR