K29947

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased width (PATO:0000599) (Cauline leaf::Shape::narrow)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	flower (PO:0009046)	abnormal (PATO:0000460) (Flower::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Silique::Shape::narrow
Hormones::Others::decrease total Auxin

Original: K29947

Determination of introduced cDNA(s)

J023044O08 - Rice Full-length cDNAs - Original: J023044O08

full reading [+] show sequence

GTGCCATCGA TCACCATTAA TTCATCTCCA TCGACAAAGC TAGCTAAGCC 
CAGTCATGGC CGCCTCTCCC GCAATGCCGT CACTCCTCCT CCTCCTCCTC 
CTAGCCGTTC TCGTCTCGGC GGCCGATGCC TACGACTCCG CCGCCAGCGC 
CAACACCAAC GCCGGCGCCA TCCCCGACCC CAACATCTTG AACATGGAGG 
CCATGTGCCC CAAGACGACG GACGTGAAGG CGTGCCAGCA ACTGGTGAAG 
AACATGCCGT CCAACATCGT CGCGGGGAAG AAGGACGCCA GGAGCATCGC 
CCGGGGGTGC ATCGCCACCG CCTGGTTCGT GGCGAGGGAC GGCGCCAAGG 
ACTGCACCGC CGCCGTGGAC GAGTGCAAGG ACAAGGTCGA CCAGTGCCTC 
GACAGCTGCC GCCACGCCTT CGCCGCCGTG AACGACGCCC TGGAGCCCCA 
GGGCACCGGC GACGACGCCG TCAAGGTCCC CGAGGACGAG AAGCTCCTCG 
CCATCCACGC CAGCCTCACG CAGCTGCTCC GCGGCCCCAC CGGCACGCGC 
CGCCCGCCCC TCTGCAACAC CTGCTGCCAG GACGGCTCGT GCACGGAGGA 
GAAGAAGCGC AACGTCGTCG CGCTGTTCGT GCAATTGTGG AGCTTGCTGG 
ATTTCGCCGA CGCGGTGCTC GAGGACCTGT ATCCTCTGAC GAAGCTGCCA 
GGGGACAAGG CCGCGGGATC AGATACCTCT GCGGCGGCGG CCGGATCAAC 
CGCCGACAAG GAGACCTCTG CGGCGGCTGG ATCAACCGCC GACACGGCGA 
CCTCTGCGGC GGCCGGATCA ACCTCCGCAA AGGAGACATC TCCAGTAGCC 
GGATCAACCG CCGATAAGAC CTATGCAGCG GCCGGATCAG CTCCTCCTGT 
CGTCGACACT GCGCCTGCTC CTCCCGTGAC AACTTATGAT TAATTACAAA 
CATTCGGTAT TTCATATTTT GGAGGATGCT ATAGGAACTT TAAATAACTC 
TTCCAAAATT TTTAGGACAC CAACGAAAAT CCTTACAAAA TTTTGACTAA 
TCAACGTTTC TAAGGAGTTT AACAAATTTC TATACGTGTA GCTTTTTCTT 
ACATATCTGA GTAGGTGCAT TGCTGAGGGC AGGGTGCGCC TTCCGTGGTT 
GTCATTCGAA ATTGTCTTTG TAACCTCGTC AATTTAATGA AGTTTAGAAC 
C

Gene models with high sequence identity

Not founds.

InterPro Scan Digest

See the detailed result >

J033143F04 - Rice Full-length cDNAs - Original: J033143F04

full reading [+] show sequence

GACTCTCTCC TCGCTCCCAC TCCCACCCAC ACTGCTCACG CTGCCATTGT 
CGCAGTGTTT GCACTTCATT CCATTCCATT CCACCTCCAC TGCTTCGTCT 
TCTCTTCTCT TCTCCGAGTA CGGTGACAGG GAGTGCAGGT TCGCGCGCCA 
CCATGCCGCC GCTGTCGCTG TCGGCCAAGG CGAGGAGGGG CTTCTCCTCG 
TCGTCGTCCT CCGCCTCCGC CGCCGCGTCC TCCTGCAGGT CGCAGCTGGA 
GCAGGACGTG AAGAAGCTGC AGAAGGCGCT GCAGGAGGAG ACGACGCTGC 
ACGCCATCCT CGAGAACGCG CTCCACCGCG CCGCGCTCAC TCTCGCCGAC 
ATGTCCTACC TCCCCACCAA CGCACAGGAG CTGCTCTCCA ACATCTCCAT 
CCTGGAAGGC ACCATCTCCA AGCTGGAGGA CGACATGGTG TCCCTGCATT 
TTCAGCTCAT CCAGGAGCGG AACGAGAGGA GGCTCGTCGA GTACCGCCTC 
AAGCAGGCGC CGCCGCCACC GCAGCTGCAG CTGCAGCAGC CACGCTCCGT 
CTGCTCCTGC CACTCCACCA AATCCGAATC AGATGACACC GCAAACGAGA 
AGTCATGTAG AGTGGACAAG GTTTATCCTT TTGCTGTCCT GCACGACTCA 
GCTATGAAAC TACAGAGGCA GCTTTCATCC AAATGCTTTG GCAATCCTAA 
TCAGCTTTCG GAGGACATCG TTCGCTGCAT GAAGAACATC TTCATTTCCT 
TGTCAGATTC CTGCAGGGAG TCCTCGAGGA CTCCCTCGAC GGAGAAGCAG 
CAGTCTGGAC CATCTCCTAG CGGAAACTAT TCAATTTCTG CATTCTGGTC 
GCTGTCCGAA CCAACTTCCA TATCCTCCTG GGTGCAGAGT CCTCAGGTCG 
ATTTGAACTA CAACAATAAT CTATTAGCTT CAGAGACCGT CTTTGATCCG 
TACAAAGCTC GCGAGAAGCT TAGTTGGGCT GACATTGGGA GCTACGGTGC 
AGCGGCTGAA GTTTCGTGGA TGTCAGTTGG GAAGAAACAA CTTGAGTATG 
CTGCAGAATC ACTAAGGAAA TTCAGATTGC TGATTGAACA ATTGGCAGAA 
GTAAACCCAA TTCACCTCGG TGATGACGCA AAGTTGGCAT TTTGGATCAA 
TTTATACAAT GCACTGATGA TGCATGCTTA TCTTGCTTAT GGCGTTCCAC 
GGAGTGACAT AAAATTATTT TCCCTAATGC AAAAGGCCGC ATATACAATT 
GGAGGTCACT CATTCAGCGC TGCATTCATC GAGTATGTGA TTCTGAAGAT 
GAAACCTCCA AATCATAGGC CACAAATGGC TCTGCTTCTT GCCCTTCAGA 
AGATAAAAGT GCCTGAGGAG CAGAAAAAGT TTTGCATTGG GTCACCTGAG 
CCACTCTTGA CATTTGCTCT CAGCTGTGGA TTGTACTCTT CTCCTGCGGT 
GAAGATATAT ACAGCAGGCA ATGTAAGGGA AGAACTCCAA GATGCACAAC 
GTGATTTTAT TAGAGCATCG GTAGGAGTCA GTCGAAAGGG GAAACTTCTG 
GTCCCTAAAA TGCTGCACTG TTTTGCCCGC GGTTTTGTTG ACGACAACAG 
CTTCCCTATC TGGATATCAC ATTTTCTACC TCAGCAGCAA GCTACTTTTG 
TTGAGCACTG TGTGTCTCAA AGGCGGCAAA GTCTCCTGGG CACCCGCACA 
TTTGGCATCA TTCCGTTTGA TTCTAGATTT CGGTACCTCT TCTTGCCAGA 
TATGGGATTT TCAAATTAAC TGCCCTGACA TGTTTCCCCA TCCAGATAAC 
ATAGAAGCCT AACATGAGAA ACACAGTGAC CAAGTCTCGT GAGCAAACCT 
ATTGGTTACA GTTGAAACAA GCTTTTGCAG CAAGCAAGTA TCTGGATTAC 
AGTATTTCTT AAACAAGCAA ATGCACATCC AGTGATCTTG GAAATGCAGG 
TTTGGTAAAA TTTTGAATCG GTATAAGCAC TGGATTAAGA TTGACATCTT 
TGGATGTCAG ATGTAAAAAA AATCTTCAGC ATGTCTTAAT AGGTTCCCTT 
GCCTCGACTT CTTGTCGAAC TCAGCAAAAC ATGTTGTACA TTGTATGTGT 
AGTAGCAAAT AAACAATGAA GTTAGTAAAG GAATTCACTG

Gene models with high sequence identity

AT3G13000.2 [+] show detail - Protein of unknown function, DUF547
E-value: 4e-157; Score: 552.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF547	6.2e-40
HMMPanther	UNCHARACTERIZED	4.4e-92
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT3G13000.2

Model type: Protein coding
Short Description: Protein of unknown function, DUF547
Computational Description: Protein of unknown function, DUF547; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G16750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR