K30036

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30036

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K30036

Determination of introduced cDNA(s)

  • J023050C11 - Rice Full-length cDNAs - Original: J023050C11

    full reading [+] show sequence

    Nucleotide sequence: J023050C11 - full reading
    GTACCCAACC ACTCATCATC CATCTGCTAC TGCTACTGCT AGCTCCATCC 
    ATTTTATTCT AGCTCCATCC ATCCTTTAAG AGAAGCTGAG ATCAAGAAAC
    GTACTCACTC TTGCCTGCAT CGATCCTTGA GTTTAATTAA CTCAAGGAAG
    AAGCAATCTT CGCTTCGGTG GATGAAGAGC AGGAAGAACA GCACGACGAG
    CACAAAAGCA GCAGGCAGCT GCCACACCAG CAGCAGCGGA GGAGGAGGAG
    GCGGCGGCAA CTGCTATAGC AGCAGCAGTA GCAAGATGGA GCGCAAGGAT
    GTGGAGAAGA ATCGGCGCCT CCACATGAAG GGTCTCTGCC TCAAGCTCTC
    CTCCCTCATC CCCGCCGCCG CTCCCCGCCG CCATCACCAC CACTACTCCA
    CCTCCTCCTC CTCATCGCCG CCCTCCTCCA CCAAGGAGGC TGTGACGCAG
    CTGGATCACC TGGAGCAGGC GGCGGCGTAC ATCAAGCAGC TCAAGGGGAG
    GATCGACGAG CTGAAGAAGA GGAAGCAGCA GGCGGCGGCG GTGCCAGGAT
    GGGACGCTGG ACGTGGTGGT GGTGAGCGAG GCGATCAGGG AGGAGAGGGA
    GAGGGCGGTG CGGCTGCACG AGGTGATCGG CGTGCTGGAG GAAGAAGGCG
    CGGAGGTGGT GAACGCCAGC TTCTCCGTCG TCGGCGACAA GATCTTCTAC
    ACTCTCCACT CCCAGGCGCT CTGCTCCAGA ATCGGCCTCG ACGCCTCCAG
    GGTCTCCCAC AGGCTGCGCA ACCTCCTCCT CCAATATTAA TTCACACCAC
    TCTTTCACTC TGCTCAGAAT GAGATAATAC TCTCTACTCT ACTCTACTCT
    GTACTGTGAT GATAAGAAGT ATAAAGAGTA GCAGACCAGA GAGCCTCTAG
    GTAGCTAGGT TAATTAGTGA GAAACAAGAG TTTACACTAA GCTAATGGAT
    GGCATGAGCG GGAGCAAGCT GTTATTACTA CTAACTCTTG GCTAACGTTT
    TTGTATCCCC TAGCTAGATG CCTGCCCTAC GTATATGTCT CCAGTCTATC
    ATGTAGGAGT ACTCCAGTAG TATACTGTGT GTGAGTGTTC TCTTTTGTGC
    CTGAAATTAA TCCAGTCCGA TGTAAGTACG TACTAGTATT TGGTTTACTG
    CATGCTCTCT AGCCTCG

    Gene models with high sequence identity

    1. AT1G10586.2 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 3e-09; Score: 60.10

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Helix-loop-helix DNA-binding 1.7e-08
    HMMPfam Helix-loop-helix DNA-binding domain 2.3e-06
    ProfileScan Helix-loop-helix DNA-binding domain 7.943
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMSmart Helix-loop-helix DNA-binding domain 0.0032

    See the detailed result >

    AT1G10586.2

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein; BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10585.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR