K30036

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30036

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K30036

Determination of introduced cDNA(s)

  • J023050C11 - Rice Full-length cDNAs - Original: J023050C11

    full reading [+] show sequence

    Nucleotide sequence: J023050C11 - full reading 
    GTACCCAACC ACTCATCATC CATCTGCTAC TGCTACTGCT AGCTCCATCC 
    ATTTTATTCT AGCTCCATCC ATCCTTTAAG AGAAGCTGAG ATCAAGAAAC 
    GTACTCACTC TTGCCTGCAT CGATCCTTGA GTTTAATTAA CTCAAGGAAG 
    AAGCAATCTT CGCTTCGGTG GATGAAGAGC AGGAAGAACA GCACGACGAG 
    CACAAAAGCA GCAGGCAGCT GCCACACCAG CAGCAGCGGA GGAGGAGGAG 
    GCGGCGGCAA CTGCTATAGC AGCAGCAGTA GCAAGATGGA GCGCAAGGAT 
    GTGGAGAAGA ATCGGCGCCT CCACATGAAG GGTCTCTGCC TCAAGCTCTC 
    CTCCCTCATC CCCGCCGCCG CTCCCCGCCG CCATCACCAC CACTACTCCA 
    CCTCCTCCTC CTCATCGCCG CCCTCCTCCA CCAAGGAGGC TGTGACGCAG 
    CTGGATCACC TGGAGCAGGC GGCGGCGTAC ATCAAGCAGC TCAAGGGGAG 
    GATCGACGAG CTGAAGAAGA GGAAGCAGCA GGCGGCGGCG GTGCCAGGAT 
    GGGACGCTGG ACGTGGTGGT GGTGAGCGAG GCGATCAGGG AGGAGAGGGA 
    GAGGGCGGTG CGGCTGCACG AGGTGATCGG CGTGCTGGAG GAAGAAGGCG 
    CGGAGGTGGT GAACGCCAGC TTCTCCGTCG TCGGCGACAA GATCTTCTAC 
    ACTCTCCACT CCCAGGCGCT CTGCTCCAGA ATCGGCCTCG ACGCCTCCAG 
    GGTCTCCCAC AGGCTGCGCA ACCTCCTCCT CCAATATTAA TTCACACCAC 
    TCTTTCACTC TGCTCAGAAT GAGATAATAC TCTCTACTCT ACTCTACTCT 
    GTACTGTGAT GATAAGAAGT ATAAAGAGTA GCAGACCAGA GAGCCTCTAG 
    GTAGCTAGGT TAATTAGTGA GAAACAAGAG TTTACACTAA GCTAATGGAT 
    GGCATGAGCG GGAGCAAGCT GTTATTACTA CTAACTCTTG GCTAACGTTT 
    TTGTATCCCC TAGCTAGATG CCTGCCCTAC GTATATGTCT CCAGTCTATC 
    ATGTAGGAGT ACTCCAGTAG TATACTGTGT GTGAGTGTTC TCTTTTGTGC 
    CTGAAATTAA TCCAGTCCGA TGTAAGTACG TACTAGTATT TGGTTTACTG 
    CATGCTCTCT AGCCTCG

    Gene models with high sequence identity

    1. AT1G10586.2 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 3e-09; Score: 60.10

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Helix-loop-helix DNA-binding 1.7e-08
    HMMPfam Helix-loop-helix DNA-binding domain 2.3e-06
    ProfileScan Helix-loop-helix DNA-binding domain 7.943
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMSmart Helix-loop-helix DNA-binding domain 0.0032

    See the detailed result >

    AT1G10586.2

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein; BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10585.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR