K30042

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30042

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30042

Determination of introduced cDNA(s)

  • J023144G04 - Rice Full-length cDNAs - Original: J023144G04

    full reading [+] show sequence

    Nucleotide sequence: J023144G04 - full reading
    GAGCGGCGAG CCACCGGCAA CCTCATGGAC AAGTGGGTCA TCGCCAATGG 
    CTTGCCCAGC GAGGTCGAGT ACGCGCTGGA TTTCCCATGG AAGGCAAGCT
    TGCCGCGAGT CGAGACGAGG GTGTATCTGG AGCAGTACGG CGCTAGCGAG
    GACGCGTGGA TCGGCAAGGG ACTCTACAGG ATGACCCTAG TCAACAACGA
    CCTGTACCTT GAGGCGGCAA AGGCTGACTT CACCAACTTC CAGAGGCTCT
    CCCGGCTCGA GTGGCTCAGC CTGAAAAGGT GGTACATCAG GAACAATCTG
    CAAGCGCACG GCGTGACCGA ACAGAGCGTG CTGAGAGCCT ACTTCTTAGC
    CGCGGCGAAC ATCTTCGAGC CCAACCGGGC GGCGGAACGC CTGGGATGGG
    CTCGCACGGC GATCCTCGCC GAGGCCATCG CGTCACACCT CCGACAGTAC
    AGTGCCAACG GCGCCGCCGA CGGCATGACA GAGAGGCTCA TCAGTGGACT
    CGCCAGCCAC GACTGGGACT GGAGGGAATC AAAGGATTCA GCAGCGAGGA
    GCTTACTGTA CGCACTTGAT GAGCTCATCG ACCTCCATGC GTTCGGCAAT
    GCTTCTGACA GCCTACGTGA AGCGTGGAAG CAGTGGCTCA TGTCATGGAC
    AAACGAGAGC CAAGGATCAA CTGGTGGGGA TACCGCATTG CTGCTAGTTC
    GCACAATCGA GATCTGCTCA GGACGGCACG GTTCAGCCGA GCAGAGCCTG
    AAGAACAGTG CAGACTACGC CAGGCTTGAG CAGATCGCCT CTTCCATGTG
    CAGCAAACTT GCCACCAAAA TTCTTGCTCA GAATGGAGGA AGCATGGACA
    ACGTTGAGGG TATAGACCAG GAAGTGGATG TTGAGATGAA AGAGCTGATC
    CAGCGTGTCT ACGGGAGCAG CAGCAACGAT GTCAGCAGCG TGACGAGGCA
    GACATTTCTC GACGTGGTGA AGAGCTTTTG CTACGTCGCT CATTGCTCGC
    CCGAAACAAT CGATGGGCAC ATCTCCAAGG TTTTGTTCGA GGATGTCAAT
    TAGGAAAATG GTTGACTACT AGAAAGGCAA TAAAAACAAG AGTTGTGTCT
    ACCAGCATGG CTCGTAAAGT GATGACTGCG AAAATTTTCT CAAAGTGAGA
    TGAATTTAGT CGATATTTGT TTC

    Gene models with high sequence identity

    1. AT4G02780.1 [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
      E-value: 1e-45; Score: 181.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Terpenoid synthase 0.0000000000036
    HMMPfam Terpene synthase, metal-binding domain 4.7e-21
    superfamily Terpenoid synthase 2.4e-52
    superfamily Terpenoid cylases/protein prenyltransferase alpha-alpha toroid 0.0000000013

    See the detailed result >

    AT4G02780.1

    Model type
    Protein coding
    Short Description
    Terpenoid cyclases/Protein prenyltransferases superfamily protein
    Curator Summary
    Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis
    Computational Description
    GA REQUIRING 1 (GA1); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G79460.1); Has 1979 Blast hits to 1971 proteins in 256 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 61; Plants - 1817; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR