K30044

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30044

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30044

Determination of introduced cDNA(s)

J023129D09 - Rice Full-length cDNAs - Original: J023129D09

full reading [+] show sequence

GGCCCGCAAC CTCCGACTCC ACGAGCTCTC TTCCCCCACG CTTCCGATTC 
TGCCCATGGC GACGCCGCCG CACGACGCCT CGCCGGCCCC ACCAAACCCT 
AACCCCGTCT CCGACGACCC CCCGCCGCCG CCGCCGGTGA CGGAGACGAA 
GCCGGAGCCG GAGCCGCCTC TCCCCACCAC CTCGATCGAC CCCACCCCGT 
CTGGCGACGA GGAGAGCGGC GATGACTCCT CGTCTTCTGT CTCATCCGCC 
TCGTCTACTT CGCCCACGGC CGCCGCGGCT GCTGCTGCTG CGGGAGGTGG 
AGGTGGAGGT GGAGGCGAGA GGGCGGCTCC CCACCCGGCG GCGAAGGATC 
TCCTCCATAT CTCCTTCAAC CAGGACTACG GCTGCTTCGC GGCGGGGACC 
AAGTCGGGCT TCCGCATCTA CAACTGCGAT CCATTCCGCG AGATCTTCCG 
CCGGGACCTC GGGGCCGCGG GGGACAACGG CGTCGGCGGT GGAGGAGGAG 
GAATCGGCGT CGTGGAGATG CTGTTCCGGT GTAACATACT GGCCCTCGTC 
GGCGGCGGAG ACGCCCCTCA CTACCCGCCT AACAAGGTGA TGATCTGGGA 
CGACCACCAG AGCCGGTGTA TCGGGGAGCT CTCCTTCCGC TCCCCCGTGC 
GCGGTGTCCG CCTCCGCCGC GATCGCATCA TCGTGGTGCT AGAGAACAAA 
ATCTTCGTCT ACAATTTCGC GGACCTGAAG CTTGTTCACC AGATCGAGAC 
GGCGCCTAAC CCGAAGGGCC TCTGCGCGGT TTCGCAGCAG CCCGGATCGA 
TTGTGCTGGT TTGCCCTGGT GCACAGAAAG GGCAGGTTAG AGTGGAGCAC 
TATGGTGCCA GGAAGACCAA ATTCATCAAT GCGCATACTT CCGGTGTCGC 
GTGCTTTGCA TTATCACAGG ATGGGAGGCT CATTGCTACT GCCAGCACCA 
AGGGGACACT TGTTAGAATC TACAATGCTG CCGAGGGCAA TCTCCTGCAG 
GAAGTACGGA GAGGTGCTGA TAGAGCGGAA ATATATAGCT TGGCGTTCTC 
CAACAATTTG CAATATTTGG CTGTATCAAG TGATAAAGGA ACAATACATG 
TGTTCAATCT AAAGATAAAT GTTGGATTAA CCACGAATGA TAAGCCCCTG 
CCTGCTCCAG ATCCTGATGT TCCACATATC AGTCCATCTC TTTCTTTCAT 
TAAGGGTGTA CTACCAAAAT ATTTCCACTC GGAGTGGTCT GTAGCTCAGT 
TCAGACTCCA CGAGGGGGAG CAATATATTG TTGCATTTGG CCATGAGAAG 
AATACCGTGG CAGTTGTTGG CATGGATGGA AGCTTCTACC GATGCCAGTT 
CGACCCTGTA AACGGAGGAG AGATGCTGCA GCTGGAGTGC TACAATTTCC 
TAAAACCATC ATCGGATCAA CCACAGTAGC AGCCCAAGCA GCGGATCTGT 
TTTTCCTCCC TTGTATCGGG GTTGTACAGT ATCTGTGTGC CCTCTCGATT 
ATTGTTATTA TTTGTAAATA TATCTTAGTG GTGATTCTAC AAGTATGCTC 
TGTTGAGGGT TAAAAGAACC CTTGTGCAGA TGGACATAAT AATATTACTC 
CCACGTTAGC AAATGCTTTC ACGATTCATG TTTCTCTATT ATCCTGAAAA 
GTTCATCCAG C

Gene models with high sequence identity

AT3G62770.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
E-value: 1e-134; Score: 477.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	WD40 repeat, subgroup	0.001
HMMPfam	WD40 repeat, subgroup	0.017
superfamily	WD40 repeat-like-containing domain	3e-33
HMMPanther	WIPI-3,4	4.9e-160
HMMPanther	WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINO	4.9e-160
Gene3D	WD40/YVTN repeat-like-containing domain	7.1e-15
ProfileScan	WD40-repeat-containing domain	8.967
HMMSmart	WD40 repeat	210
HMMSmart	WD40 repeat	0.00082
HMMSmart	WD40 repeat	0.0088
HMMSmart	WD40 repeat	120

See the detailed result >

AT3G62770.1

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Curator Summary: Required for autophagosome formation during nutrient deprivation and senescence.
Computational Description: AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1516 Blast hits to 1443 proteins in 266 species: Archae - 0; Bacteria - 93; Metazoa - 578; Fungi - 450; Plants - 210; Viruses - 2; Other Eukaryotes - 183 (source: NCBI BLink).
Link: InterPro Scan - TAIR