K30046

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30046

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30046

Determination of introduced cDNA(s)

  • J023147K18 - Rice Full-length cDNAs - Original: J023147K18

    full reading [+] show sequence

    Nucleotide sequence: J023147K18 - full reading
    GAAGGAGGTG GCCAACTGGG GACTTGTCTT CCGAATTTCT ATCTTTTGCC 
    AGATCACCAC GGCATGCCTC TTCCTCCTCC ACTTCAACTA CCGTGCCATC
    CGAAGCTACT CCAGATGCCA TTCGACCAAG AAGATCAGCC CGGAATCCAT
    GGCGTGATGC TCTCTTCTGA CCACTGCGGG CTGTACCCTC TGCCGGCGCT
    TCCGTTAAGC AACTCCGCCG CCGCCGCCGC CGCAACCGTC GCATTGGGGA
    AGCACAGTGC AGCCGCCGGT TCCATGCCCA ATATTGGCGG CGCTGAGGAG
    GTGGCCACCA CTGTAACCAA AGCTGGCAAT GAGAGTACTA CTTGCAATGG
    CTCCACTACA TGGTGGAGGG GCTCGACGAT GGCGGCGATG GGGGAGAAGG
    GGAAGATGAA GATCAGGAGG AAGATGAGGG AGCCGAGGTT CTGCTTCCAG
    ACCAGAAGCG AAGTGGATGT GCTGGATGAC GGGTACAAGT GGAGGAAGTA
    CGGACAGAAG GTTGTCAAGA ACAGTCTCCA TCCCAGGTAC ATATGCTCAA
    CTTAACCAAA ACCCTACATA TTTGATTTCT TATATCATTT ATACATATGT
    GTAGATAATA GATTCCCCGT TTCTTATCAA TTAACTAATT ATAAACATAA
    ACAGAAGAAT GTCTCGATGC CTATTTAATT TGGTTAATTA GTAATACGCA
    AGTTTATATA TACCAGATAA AATATCAATT TTATATGTAC AGAACTGAGC
    CATGTTGATC TTGTTTTTTC TCCTAAAGGG CTTCTTCAGA ACATGGAAAA
    TTTGTAGGAT TTTCACAGGA AACATTTCAA TTTCTCCCAA ATTCTCGTGA
    AATTCCTCCC AACCCAATAT ACCAAGGGTA CTCTCTATGG CAGAAGAGAA
    TTAATGCATG CCTGGTTAAA CTAACTTGTC AACAAAGGTC TTGATATGAA
    TAGATTAGAA GCTGATTTAA GACAAGGCAA AATATCTACA AATATAATTA
    TATATATGCA GGCTAGATTA TTACTTTTCC TTTTTATATC AATATAGTTA
    AAAGCGATTT TACAGTACTT AAGAGATGTT AGGAGGTGCC ACCGTTTTTA
    ATGTAAATTC TGGTACCTCT GTAATTAGTA TTTAAGGTAC TACCAAGTCT
    TTACAATAGA AAATATGGTA TCTCTTAACA AGGGAAATGT AAAATTCCTC
    ATTTAATTTG GTATGTGCTT ATCTATTAGC TCTGTACTTA TGATATATAT
    GTTTATTTTG CTTCTACCTA CAATCGAAAT AAACGCAGCT ACTCCTATAA
    CATATTGCTG TCCAATTATA TGATCCATAT GTCAAAAGTG TTCGCCAGTA
    TATGGAAAAG TTTCACACAC TTGTCATCAG ATGACCCTTG CAAATAATCT
    TAATTATGTA CTAGTTAATT AAGGTCCAAG AATTAATGGG TATTTTAATT
    AAATGGGGGT TCACTTTGTT ATAACAATGA AAATAATCTA TTGAGCTGAA
    TCTGACAGGC TCACCTTCTG CACAGTTTTA TTAAAAAAAT ATTTTTAATG
    CAAATTGTTA CATTTTGGTG AACAAGCTTA ATTAGTTACT AGTTACATTT
    CGGTGACAAG TTTAACAAAC TCATCATACA TAACTAGCCG TATCAGTTCT
    TTAATTTATG ATAGGTACTG TCATCCCTGA TGCAGATAAA GGGACGGGTC
    ATAAATAGAT TAAGGATCGA GTTCTTACCA CAAATATTCT GAATATGCAT
    GTATGAGAAG GAGTCTTGGG GTAATTAATT AAGGTATAAC GGATCCTAAT
    ATGGGCACCA TGAAAGAGAG GACCCTAAAT TTGCCAAACT AAGGACGATG
    CATGCCATTC TACACACTCA TACAACACAA GTAGTGTAAG CCTTAGCTAT
    TTCATGCGAT AAAATAAACG GCAATTAGCA GCCAATTAAC ATAGGCACAA
    AAGGTACATT AATAAGAAAG ATGCTTCAGT TCCCAATTCA TACATCCGTT
    TGTGAGAAGC TGTGTTAGGA GTATACTGCA CTGTATCTGG CATCTTATAT
    ATCTATGTAT AATGTTCATA TAATGATACT ATTTCTTTAT CTCATTAAAC
    CATATCACCT CAATTGTCTT TGACACTTAG ATGATTAATT TATGGTCCAA
    ATTATTTTTA TCATTTTCTT TCTCATACGA AGTTATATCA CCTTAGTTTT
    GTCTTTAGAT GATTAATCTA TATTATTTCT CCTTTTTTTT ATTTTGTCGT
    TGAGGCATAT CACCTTAGTT TTACTTTTTA ATGATCAATT TATATATGAT
    TTAAATTATT AAAAATCACG CCATCTAAAC TATTTTTAAC TTTTTTCATG
    GTCGATCAAA GATGAAAATT ATATAAAATT ACGTCATCCG TCATCTAGCT
    ATTTTTACAT GTTATTTGTT CTATTATTAT ACAGAACTTC CGCTGCGATG
    CGCGGGCCCA ATCTAACTCC CATCTCCTTG CAGAACTCGA TCGATAAAAA
    TTAATTAATG TTGTCAATTA GCTAATTACG TCGCATGCGG GAGTCATCGC
    ACGGCCAAAT ATCTAAAAAA ACATGTAATA GTCCTTTCAT TTCAGTAAAT
    AAACACATCT ATATTTTTTT AATCTATATA TTAGATTGAG AAATGGAAAT
    TGGTTAGTCA GTACTCCCTC CGTCCCCTAG TATAAGGGAT AGACTAGTAC
    TCCATCCGTT TCATAATGTA AGTCATTCTA GCATTTTCTA CATTTATATT
    GATGTTAATG AATCTAGACA TATATATCTA TCTAGATTCA TTAACATCAA
    TATGAATGTG GGAAATATTA GAATGACTTA CATGGTGAAA CGGAGGAAGT
    ATATAGGAGG ACACCATGAA TATAACTCTC TGGTTTTGCG GAGCTTCTGA
    TCTGTTGGAG ATCAGAACTA CAAACAGGCA TTTTTGTGTG ATTTGGATGT
    ACACATGCCA AAACTGATCG ACGATATATA TATGAATGCG CATATGCATG
    CATGCAGGAG CTACTTCAGG TGCACGCACA GCAACTGCCG CGTGAAGAAG
    CGGGTGGAGC GGCTGTCGAC GGACTGCCGC ATGGTGATCA CCACCTACGA
    GGGCCGCCAC ACGCACTCCC CCTGCGACGA CAACTCCTCC GGCGAGCACA
    CCAACTGCTT CAGCTCCTTC TGAAGATTTT AGCACTTTGC ATTTTCGTCG
    TTGATCCATC CATCAATATA TATACCGTCG TATACCTATA TGTCCACCGT
    TTGATCGATT AACTGTGGCT AGCTCTAGCT CTCTTTCATT TTGATGGTTG
    AGATATATAG GCGACGTAAT ATCGAGCCAT GCCTGCGCAA TGTACCAGTA
    CTGCTAGCTA TACGTGAGAT GTATTGCGTG CATGCACGTA CAATTTACAA
    GCAGCAGTCA ATAAATTAAG CTATGTATTT CTTCT

    Gene models with high sequence identity

    1. AT2G44745.1 [+] show detail - WRKY family transcription factor
      E-value: 1e-21; Score: 103.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA-binding WRKY 0.0000000055
    HMMPfam DNA-binding WRKY 0.000000000000018
    Gene3D no description 0.000000011
    Gene3D no description 0.0000000065
    HMMSmart DNA-binding WRKY 0.00064
    HMMSmart DNA-binding WRKY 0.00000000079
    ProfileScan DNA-binding WRKY 13.035
    ProfileScan DNA-binding WRKY 15.48

    See the detailed result >

    AT2G44745.1

    Model type
    Protein coding
    Short Description
    WRKY family transcription factor
    Computational Description
    WRKY family transcription factor; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 13 (TAIR:AT4G39410.1); Has 3506 Blast hits to 3049 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3483; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR