K30103

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30103

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30103

Determination of introduced cDNA(s)

  • J013066N17 - Rice Full-length cDNAs - Original: J013066N17

    full reading [+] show sequence

    Nucleotide sequence: J013066N17 - full reading 
    GCTCTCTCTC TCGGTGTTTC CCCTTCGGCC TTCTCGTCCG CCCCTTCTCT 
    CCTCCACCAT CCGCCTCACC GGCGTACGGC TCCGACGAGA TGGCCGCCCC 
    GCTCCGGCGG AGCCTCCCCT CCCTGGGGCG CACGCTCCTC TCGCCGTCCC 
    CCGCGCCCGC GCGGATGCTC TCCGCGGCGG CGTCCGACGC CCTCGTCGAG 
    ATCAAGCCAG GCGAGATCGG CATGGTCTCC GGCATCCCCG AGGAGCACCT 
    CCGCCGCAAG GTTGTAATAT ATTCACCCGC TAGGACTGCA TCTCAGCAGG 
    GTTCAGGCAA AGTCGGGAGG TGGAAAATCA ACTTTGTGTC AACCCAAAAG 
    TGGGAGAACC CATTAATGGG ATGGACATCT ACTGGAGATC CATATGCTAA 
    TGTTGGTGAA GCAGGGCTTA CGTTTGACAG AGCAGATTCA GCAAAGGCAT 
    TTGCTGAAAA GCATGGATGG GATTATGTGG TTAGGAAACG CCATACACCT 
    CTTTTGAAGG CCAAATCTTA TGCAGAGAAC TTCAAGTGGA GGGGTCCCCC 
    GAAGGCAGAG CAAGCCTGAG CACTAATCTT GCATGCTACA TTGCTAGCAG 
    GACATGCACA AGATGGTGTT TACCCCCATA TGTGTTGTTT TTGGTTTCTC 
    CAATCTGTTG TGCGAGTGTG GGCTTAGACC GTTCCTCAAC CAACTCTCAA 
    TTATAATAAG CGTGCACTGT GATCAAATAG AATGATTTCC TGTGTACTAA 
    AATTGTTTAC CATTATCCTT CCACATCATT TCATAAAGAT CCTTTACCTG 
    TTTGCTTAGG TTGTTAAAGC

    Gene models with high sequence identity

    1. AT5G67590.1 [+] show detail - NADH-ubiquinone oxidoreductase-related
      E-value: 4e-53; Score: 204.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ETC complex I subunit conserved region 1.5e-36
    HMMPanther NADH-UBIQUINONE OXIDOREDUCTASE 18 KD-LIKE SUB 4.7e-69
    HMMPanther ETC complex I subunit conserved region 4.7e-69

    See the detailed result >

    AT5G67590.1

    Model type
    Protein coding
    Short Description
    NADH-ubiquinone oxidoreductase-related
    Curator Summary
    Mutant leaves have a reduced capacity for cold acclimation, appear water-soaked, leak electrolytes, and accumulate reactive oxygen species constitutively. Encode a protein with high similarity to the 18-kD Fe-S subunit of complex I (NADH dehydrogenase, EC 1.6.5.3) in the mitochondrial electron transfer chain.
    Computational Description
    FROSTBITE1 (FRO1); CONTAINS InterPro DOMAIN/s: ETC complex I subunit conserved region (InterPro:IPR006885); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR