K30104

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30104

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30104

Determination of introduced cDNA(s)

  • J013099H24 - Rice Full-length cDNAs - Original: J013099H24

    full reading [+] show sequence

    Nucleotide sequence: J013099H24 - full reading 
    TGCCCTCCTC ACTCTCTCCC CTCCTCTCCC CTCCTCCTCC CCCCACCTGC 
    ACTAATTAAT CACGCCACGA GACGAGATCC CCCTTCTCCT TCCTCCTCCC 
    ACCGCCCGCC TCCTCCTCCT CCTCCTCCTC CTCCGCCGCC GCCGCCGCGC 
    GCAGGTTGCT ATCGGAGGGG AGACGCGGGA GGCCCCCCCC TCTCGTCTCC 
    GCGCCACCCA GGTTGACCTT GTAGAATGAA TCCATAAAGT GATTCTTTAT 
    TTCAACATAT ATTGGAGATG GATGATCTGC CGGATGATCA AGGACAATCC 
    GACGCACACC CTTCAGATCC AAATTGGTGG TCCTCACATG CGGAGCACAA 
    GCTCGGATCA ATTTCTCTGA CTAAACAGGA AAGGAATTCG GGTTCGCCAG 
    GATCTTCTCA TTGTGGGGAA GGTGACCATT CATTATGGGC TGCCCAGACA 
    TCATGGTGTA CTGGGTGTTT ATCAAGTCCA ATACCCAATG GTTTTTATTC 
    AATTATTCCT GATAAGAAAC TGAAGGAGCG TTTTGACACC ATCCCGTCTC 
    CAGATGATCT TTATTCCCTT GGAATAGAGG GATTCAAAGC TGAGATAATT 
    CTTGTGGATT TAGAGAAGGA TAAAAAACTA TCTGCTATAA AGCAGCTATG 
    TGCAGCATTG GTAAAAGGAT TGAAATCGAA CCCTGCTGCA ATGATAAAAA 
    AGATTGCAGG GTTGGTTTCT GACTTCTATA AACGGCCAAA TCCGCAACTC 
    AGTCCTGCAA GAACTTCCTC TGAGGAAATT TCTCATTTCA TGGAAAACCG 
    TGGAGTTCAA TTGCTGGGGC AAATTAGACA TGGATCTTGT AGGCCCAGAG 
    CAATATTATT CAAAGTTCTT GCAGATGCTG TTGGTATGGA TTGTAAGTTG 
    CTGGTGGGCA TTCCGAATGA AGAATACCAT GAATATGATG ACTCATCCAA 
    ACATATGTCT GTTGTGGTTA TGCTGAAATC TGTGGAGTTT CTAGTTGATC 
    TTATGCGTTT TCCTGGACAA CTAGTTCCAT TCTCATCCAA GGCTATAATT 
    ACATCACATA TATCTGCAGC TGGAGAGAGT GACTCAGCTG ATTATGATTC 
    TTGTGATTCT CCTCTTGAAC CTAATAGTCC TCTGTGTTCC CAACGCCAAG 
    AGCAAGATGA CAACAATAGG TCCTTCAAAG TACCATCTCT AAGAAATATC 
    ATGCTTAAAT CGACAAACTC TATGGAGGGT AAATTGCGAT GCTCATCACA 
    CAGTGAACCA AATGTGGCCA ATTCCTTCTG TGGTCGCAGC CGGAGGAAGG 
    TTGTGGAGGA ACATCAAAGA ACTGCTAGCT CAAGTCCAGA GCACCCATTG 
    TCTAGAACAC GGGGACGCTC TATGCTTGGT GATAGACAGC ATGGAGATGG 
    TGTAGCTGTC TCAAGGTCAG ATGGCGCATC AACATCTAAT ATGCGTAGAG 
    GACGGCGAAG AAGTATAAGT TTTACCCCTG AAATTGGTGA CGATATTGTG 
    AGCGCAGTTC GAGCAATGAG TGAAAGGATG AGAGAGAATC GCCTTTCAAG 
    GGGACAAAAT GATGGTAGTC CTGGACAATT GAATGATTCA CAAAAAAATG 
    AATCACCTCA TGATTTCAAT GACAATGAAC TACATGTAAG AGGACCAGAT 
    GAGCAAGAGG GCTCAAGAAG GCAAGTTAGT AACCAGAAGG CTGTGTCATT 
    ACCTTCATCG CCCCATCGAT TGCGCAGTGA TGGTTCTGGC CTCAGAGGAC 
    CAGCCGAGTT TCTGACAGCA GATCTGATGT CCACTTGGAA TAAGGTTTTG 
    CGATCTTCAC CATTTCTGAA CAAGCCTTTA TTGCCTTTCG AGGAATGGCA 
    TATTGAGTTC TCAGAGATTA CTGTTGGCAC TCGAGTTGGG ATAGGGTTCT 
    TTGGAGAAGT TTTCCGTGGT ATCTGGAATG GAACAGACGT AGCTATAAAA 
    TTATTCCTGG AGCAAGATTT AACAACGGAG AATATGGAAG ATTTCTGCAA 
    CGAGATCTCC ATACTTAGCC GTCTTCGACA CCCCAATGTT ATATTATTCC 
    TTGGTGCATG CATGAAGCCT CCTCACTTAT CCTTAGTCAC TGAATATATG 
    GAAATGGGTT CGTTGTACTA TTTAATTCAT GCAAGTGGCC AGAAAGGTAA 
    GCTCAGTTGG CGAAGGAGGC TAAAAATGCT TCGTGACATA TGTAGGGGTC 
    TTATGTGCAT GCACCGTTTG AAGATAGTTC ACCGTGATCT AAAGAGTGCA 
    AATTGCCTTG TTAACAAGCA CTGGGCAGTC AAATTATGTG ACTTTGGGCT 
    CTCTCGAGTG ATGTCAAATT CTGCAATGAA TGATAATTCA TCTGCAGGAA 
    CTCCGGAGTG GATGGCCCCT GAGCTTATTC GTAATGAACC ATTTACAGAG 
    AAGTGTGATA TCTTCAGCCT TGGAGTTATC ATGTGGGAGC TTTGCACTCT 
    GAGTAGGCCT TGGGAAGGAA TACCGTCAGT TCAGGTGGTT TATAATGTGG 
    CGAATGAAGG GGCACGGTTG GAAATACCAG ATGGACCTCT CGGAAGCCTG 
    ATAGCTGATT GCTGGGCGGA ACCGGATAAG CGTCCAGGTT GCCAGGAGAT 
    TCTCACCCGC TTGCTTGACT GCGAATACAC CTTATGTTGA GATAATCTGC 
    CTCTGGTCTG TATAGCGGTT TTAGAGGCAG CGAATTGGTT CGGCTTATAC 
    ATCGTTTCTT TTTCCCATTT CTCATCATTT TGACATCGTT GATGATGTAA 
    ATTGGCAACC TGTACTATAA TAAGCAAGCC TCAAAGCATC TTTAATGTTA 
    CACCATTGGT CGTGTGACCA TTTTCCATGG TACTCCCTCC GTTTCATCAT 
    TTTCCATGGT TCCATGGTAC CATTTTACCC GCAGCCATCA TTTACCAAAT 
    ATTGGACCTC CGAGTTTTGT CCCTTTCCCA GTTACGAAGT GAATTTAACT 
    GTTCTCC

    Gene models with high sequence identity

    1. AT3G58640.2 [+] show detail - Mitogen activated protein kinase kinase kinase-related
      E-value: 0; Score: 909.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 3.9e-78
    Gene3D no description 1e-21
    Gene3D no description 5.9e-49
    HMMPanther MAP3K DELTA-1 PROTEIN KINASE 1.4e-159
    HMMPanther SERINE-THREONINE PROTEIN KINASE 1.4e-159
    ProfileScan Protein kinase, catalytic domain 41.432
    HMMPfam Serine-threonine/tyrosine-protein kinase 1.5e-60
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 2.4e-63
    HMMSmart Tyrosine-protein kinase, catalytic domain 5.5e-55

    See the detailed result >

    AT3G58640.2

    Model type
    Protein coding
    Short Description
    Mitogen activated protein kinase kinase kinase-related
    Computational Description
    Mitogen activated protein kinase kinase kinase-related; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G31010.2); Has 125614 Blast hits to 123525 proteins in 4988 species: Archae - 158; Bacteria - 13731; Metazoa - 47851; Fungi - 11388; Plants - 32996; Viruses - 518; Other Eukaryotes - 18972 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR