K30114

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30114

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30114

Determination of introduced cDNA(s)

  • J013105N04 - Rice Full-length cDNAs - Original: J013105N04

    full reading [+] show sequence

    Nucleotide sequence: J013105N04 - full reading 
    GAGCTTCTTC TTCCTGCTTC CTCTCTCTCT CTTCTCTCCT CCTCCTCCCA 
    CTGAGATCCC TCTCCCCTCC CCGCCATCGC CATGGCTCCC CCACCGCCGC 
    CGCCGCCGCC GTCGGAGGAA GAGACGAGAC ACTAGAAAAG ACGGTTCTTG 
    ACCGAGTTTG CGGCCGATCC GGGCTTGGAT TTGCCACGGG AAAGGAAGGA 
    GTTTCGGGGG CTGATAGAGT GAAAGGCGAC GAGGGAGAAG ATGGCCTCGG 
    AAATGGTTAA GGCGGCGACG AGTGAGAAGC TCAAGGAGAT GGATTGGGCC 
    AAGAACATCG AAATCTGCGA GCTCGTCGCT CAGGATCCTG GGAAAGCGAA 
    GGATGTGATC AAGCCGATAA AGAAGTATTT AGGTAGCAGG AGCAAGAACA 
    CTCAACTTTA TGCTGTTATG CTGTTAGAAA TGCTCATGAA TAACTGCGGA 
    GAACCTATCC ACAAGCAGGT CATTGATAAC GGTCTTCTCC CGATACTTGT 
    GAAGATTGTG AAGAAAAAGA CAGAATTACC AGTTCGTGAA AAAATATTTC 
    TTTTGCTGGA TGCGACCCAA ACATCCCTTG GTGGAGTTAA AGGGAAATTC 
    CCTCAGTACT ATGGGGCATA TTATGAGTTG GTGTCTGCTG GCGTTCAGTT 
    TTCGAATCGC CCAAATGTTG TTGTTACACA AGCACAAGCT CCAGTCCCGG 
    TCCCAGAACC AACAATCGAA CCAAATAATA ACAGTTTATC TAGGAGATTG 
    GACGAAGGAC AGAAGGAAGT GCATGCGCAG CCTGTTTCCG AGTCAAGTAT 
    AATTCGGAAA GCTTCTAGTG TCATGGAAGT TCTAAAGGAC GTGCTTGATT 
    CGATGGATCC TAGACACCCT GAGGGAGCAA CTGATGAGTT TGTGTTGGAT 
    CTTGTGGAGC AATGCACATT TCAAAAACAG CGAATAATGC ATCTAGTTAT 
    GACATCAAGG GATGAAGTGG TGGTATCACA AGCAATAGAA CTGAACGAGA 
    GCTTCACAAG GTCCTTGTAC GGCATGATGC GTTGCTTTCA GTTCAGCCAA 
    CTACAACAGT AGCTTCTACT CTCAAGGAGG AAGAGGAAGA AGATGCCGAA 
    AGCCTTTACC GGAGGCTTCG AAAGGGAAAA GCATTATCGG AAGATTATAC 
    AGATGACTCC ATACCATCAT TTCGATCTAT ACCTGAAGAC AAGATGCGCC 
    GCCCACTCAC CATTGAGCCA TCCAACACTG ATAAGAAACT GGGGGCACTG 
    AATATTCGCT CGCCATATCC TGAAGCGAGG CCTGACGTGC TGATTCCACC 
    ACCGCCTGCC AAGCACGCCG AGAGGGAGAG GTTCTTTCGG GAGAAGAGCA 
    TGGATGCCAA CTTGCTGGGC CATCTTAGGG GCTTATCATT GCACAGCCGG 
    GACGGCAGTA GCTCGTGTAG CGGCAGCACA GATTATGGAG ACTGAGGTGT 
    AGGTATATGC GGTACATAAA GGATTATTTT TTGTTCTTCA GGATGATATT 
    CTGCTTGCCC GGCAATTGAT GTTGAGAGAG GCAGCCTCAG CCTCATCGTC 
    GTCATCTTCT CGCTGACCAT TGTACACTTG GTTTTCTAAT TCTTTTATAA 
    TTCTTCCCCC TTCCGCTTAC CTGACATTAT CGGAAAGTTG AACAATGCTG 
    TGTTGTGAGC TTTCAGTTCT ATAGAGATGC TTGTGTGGCA AGCTGTGTGA 
    GTGACC

    Gene models with high sequence identity

    1. AT5G63640.1 [+] show detail - ENTH/VHS/GAT family protein
      E-value: 8e-78; Score: 288.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart VHS subgroup 2.4e-27
    HMMPanther TARGET OF MYB1 RELATED (TOM1 - RELATED), PLAN 1.2e-84
    HMMPanther VHS DOMAIN CONTAINING PROTEIN FAMILY 1.2e-84
    HMMPfam VHS 2.1e-21
    HMMPfam GAT 1.9e-13
    ProfileScan VHS 32.22
    ProfileScan GAT 10.719
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D ENTH/VHS 7.8e-33
    superfamily ENTH/VHS 1.6e-39
    superfamily GAT-like domain 6.2e-16

    See the detailed result >

    AT5G63640.1

    Model type
    Protein coding
    Short Description
    ENTH/VHS/GAT family protein
    Computational Description
    ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT4G32760.1); Has 1276 Blast hits to 1268 proteins in 185 species: Archae - 0; Bacteria - 4; Metazoa - 656; Fungi - 270; Plants - 272; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR