K30121

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30121

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30121

Determination of introduced cDNA(s)

  • J023020O19 - Rice Full-length cDNAs - Original: J023020O19

    full reading [+] show sequence

    Nucleotide sequence: J023020O19 - full reading 
    GACATCCCCA TTGCAGAACC TCTCTCCCTT CTTGGTTCTT CTTCTCATCT 
    CCTCCCACTC CAGCTCTGCC CCTGAGCCAA GAACTGAGCA GCAGAGAGCT 
    CGTGGTCTCT TTGCCAGCTT CTCCTCAGTC CTCACCAAGC TGTTCTTGCA 
    GAGAAAACAT AGCCAAAGAG CTAATTTGAG CTCCCACCAT GAAGTACGTG 
    CTGGTGACAG GAGGGGTGGT GAGCGGCCTC GGCAAGGGCG TGACCGCGAG 
    CAGCATCGGC GTCGTGCTCA AGGCCTGCGG GCTCCGCGTC ACCACCATCA 
    AGATTGACCC ATACCTCAAC ACTGATGCTG GAACCATGTC TCCGTTCGAG 
    CATGGTGAGG TCTTCGTTTT GGACGATGGT GGAGAGGTGG ACTTGGACCT 
    TGGAAATTAC GAACGTTTTC TGGACATCAA ATTGACCCGT GATAACAACA 
    TAACCACGGG AAAAATATAT CAGTCAGTCA TTAACAAAGA AAGGAGAGGA 
    GACTACTTGG GGAAAACCAT TCAGGTTGTG CCACATATTA CAGATGAAAT 
    TCAAGATTGG ATTGAACGTG TAGCGATGAA TCCGGTCGAT GGTAAAGAAG 
    GACCTCCTGA TGTTTGTGTC ATAGAACTTG GTGGCACCAT AGGGGATATT 
    GAATCAATGC CCTTTATTGA AGCATTAGGT CAATTTTCCT ACCGTGTTGG 
    ACCTGGAAAC TTCTGTCTGG TCCATGTCAG TCTTGTTCCA GTTTTAAATG 
    TAGTTGGTGA ACAGAAAACT AAACCTACCC AGCATAGTGT TCGTGGGCTA 
    AGAGGCCTTG GATTGGCACC TGACATTTTA GCATGTCGCA GTACCGAGCC 
    ACTGGAAGAA AACGTGAAAG CAAAGCTCTC ACAATTTTGT CACGTTCCAG 
    TCTCAAGTAT TATTAATCTC CATGACGTTA CAAACATTTG GCACATCCCC 
    TTGTTGCTAA GGGACCAAAG GGCCCATGAA GCTATTCTGA AAGTTCTAGA 
    CCTTCAATTT GTCGGTAAAG TACCACGAGA ACCCAAGTTG GTTGAATGGA 
    CCGAAAGAGC CAGCAAGTTT GACAAGTTGA AGGCTACGGT TAAGATTGCG 
    ATGGTTGGAA AATATACTGG GCTGTCCGAT TCCTACCTGT CTGTTCTAAA 
    GGCACTTTTG CATGCATCGG TTGCTATGGG AAGAAAGCTT GTAGTGGAGT 
    GGGTTCCTTC CTGTGATCTT GAAGATTCTG CAGCCAAAGA GACCCCTGAA 
    GCCCATAAAA AAGCATGGAA GCTACTCAAG GGTGCAGAGG GTATACTTGT 
    CCCTGGAGGC TTTGGAGATA GAGGTGTTCA GGGAAAAATT CTTGCTGCAA 
    AATATGCACG AGAAAATAAT GTTCCTTATC TCGGCATTTG CTTGGGTATG 
    CAAATTGCAG TGATTGATTT TGCCTGTTCT ATCATGAAAT TACCGGGTGC 
    AAATAGCACA GAGTTTGACC CAGATACAAT GTCACCCTGC GTCATTTTCA 
    TGCCAGAGGG TTCCAAAACC CATATGGGGG CAACTATGCG GCTTGGATCA 
    AGGAGAACAT ATTTCCATGC CACTGCATGC AAATCTGCAA AGCTGTATGG 
    TAATGCTAGA TTCGTAGACG AAAGACATCG ACACAGATAT GAGGTAAATC 
    CTGAAATGGT ACCAGAGTTT GAGAAGGCCG GACTTTCATT TGTTGGCAAG 
    GATGAGAGTG GAAGACGCAT GGAGATTATT GAACTACCCA GTCATAAATT 
    TTTCATTGGA GTACAGTTCC ATCCTGAATT CAAGTCAAGA CCAGGGAAGC 
    CATCTCCACT TTTCTTAGGA TTAATAGCAG CAGCATCTGG ACAACTAGAA 
    ACTTTGCTCC AACCAAGTTC CAACATTGTC AATCCAAATC CTATGCCCAG 
    ATTTCCCATT CCCAAAAAGA CGATTTACCA TGCCAAGAAG CCACTGGACA 
    GCTTGGTAAA CGGATACTTT GCAAATGGCA ACGTCATCCA CACTTGATTA 
    GCAGTTGTGC AAATCCTAAG CGAGGCCTTG TTTGAGATTT GTTTCTACGG 
    TTTTCTGCTT GAACCCTAAT CTTTTCTTCT TCTTCGTTTT CGTGTTTTTT 
    TTTTGGCTTT GTATTTGTCT CTGCTCAACT GAGAAGGCTA AGAGTTGCAA 
    GCTCCAGATA CACGGTTCCC ATGTTTTAAG AGGAAACGTC CTCCGGTCAT 
    GTTGAAGCAA AGTTTAGCTA TAGGGTGGTG TAGTGTGCTG TTTATTTCCT 
    GCTGAGGCCT CAATTAAGGC TGGAAATGTA TTGGTAGCTT TAGTATAGCC 
    TGGCATCTCA ACTATTTGTA CATTGGGAAA AAAACCTACC TAAGTACTGA 
    ATATACAAAT GCTTGGCCAA GATTGCTTAC TTCAATGAAG AGTTGGGCAT 
    CTCTGTATCC TTTTCTTTTA ACAGCAGGCG ATCTGAGACA TGAATATGCT 
    G

    Gene models with high sequence identity

    1. AT3G12670.1 [+] show detail - CTP synthase family protein
      E-value: 0; Score: 816.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 4.4e-118
    superfamily Class I glutamine amidotransferase-like 1.2e-60
    HMMPanther CTP SYNTHASE 1.8e-243
    ProfileScan Glutamine amidotransferase type 1 22.355
    HMMTigr CTP synthase 0
    HMMPfam CTP synthase, N-terminal 3.9e-125
    HMMPfam Glutamine amidotransferase class-I, C-terminal 1.2e-57
    Gene3D no description 1.6e-116
    Gene3D no description 9.1e-92
    HAMAP CTP synthase 45.413

    See the detailed result >

    AT3G12670.1

    Model type
    Protein coding
    Short Description
    CTP synthase family protein
    Computational Description
    embryo defective 2742 (emb2742); FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: response to cadmium ion, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT1G30820.1); Has 10841 Blast hits to 10805 proteins in 2914 species: Archae - 237; Bacteria - 5484; Metazoa - 258; Fungi - 230; Plants - 171; Viruses - 0; Other Eukaryotes - 4461 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR