K30123

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30123

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30123

Determination of introduced cDNA(s)

  • J033099I24 - Rice Full-length cDNAs - Original: J033099I24

    full reading [+] show sequence

    Nucleotide sequence: J033099I24 - full reading 
    GAGCTGTCTC CCCCCTCTCA CGCGGTCACG CCCTCCGCAC CGCACGCCCT 
    CGAGTTTCTC CTCCTCGTCG ACGTCGACCT CGCTTACGGC TTCACCCATC 
    CGCAGCCGCC GCCGTCGCCG TCGTCGTACG ATTTCCACGC GAGCCGCGAT 
    GCCGCCTCCA GCGTGGGGGT GGGGCTCCAA CCCGCTGGAG CCCGTCGTCC 
    ACACCGTCGC GGCCTTCTCC CGCCGCCTCC TCATTGCCCC CGACGCCGCG 
    CCCGACGAAG CACGCCTCCG CCCCCTCCTC TCCCTCTCCC TCTCCCCTCC 
    GCCCACCCCG CCGTCGCCGC CGCCGCCGCC ACCGGAGGTC CTCAAGAAGG 
    ATTCGAAGGC GGCGCCCCTG ACCAAGGAGG AGGTCGGCAG GGCCACGTGG 
    ATGCTGCTCC ACACCATCGC AGCGCAGTTT CCTGACGAAC CAACCAGGCA 
    ACAAAGACGC GATGCGAGAG AGCTGGTAAG CATTAAGCAG GATAAACAGT 
    TAGTGATATC TCTCTAGAGT TTGGGTGGAA GTATGGTAAA GTCCCTTGTT 
    TTGATTTTGG GGGAAACATG AGGACCTTGC TGTCGCTACC CACTCGTAAT 
    TTGTCACGGC TAACTACAGG ATTGTTGAAT CTTAGAAAAG GCACTTTCTT 
    GATGTTTATC TTGGGGGCCT TGTATTCTCC TGCAATGGAT CCTGTTTAAG 
    ATATAGCTTG TATTTAATTT ATTCTTTATG TGCCTTGAAA TATTCAAGAT 
    TACTTTAAGA CTGCACAGTA AAGTTCCAGC ATGGTAATCT CGTGATTTTG 
    TTGCTACAGG ATGCAGGCTT TGTTCTAGGT GTTCTCCTGG TTCATTCCCC 
    GCTAACTTTG AGCTTAGACA TTTTTAGAAA ATGTTTTGTG CTTTTGGTCT 
    AGCACAGTTA TGAATTACCA CTACATTGCT TGACAAATAA ATGTTATACT 
    TTGCATCGTT GAAAATGGGT GGCAGTATGT TACGACTACT GCTAAGGTTT 
    CGTTTGGAAT CGACTATCTC ATTTGATTGA ACCTCATTTA GATATATGGG 
    TGTTTGGCTA GCTGTTATTT TTTTTTCTCA ATCATGGTGC ATACAGATGC 
    ATTATCATCA TATAAAACAT CTGAGTTGAA ATTTGATGGA TGAGTCTACC 
    AAATTGGATA ACTGAGTTTT ACAAATTGTT CCATGAAAAC TTAAAAAATA 
    AGCATAGGCC AGCACAACAA CTGCAAATTG AGCCTCAATC CATGATGAAT 
    AATGGGAAGT TCGTTCACTG GTTTTTTACT CGCTTTAACG AAGAGGAATT 
    ATTTTATTAT TTCCTGAAGA ATTACATTTT TCTGCATCTC ATTATTCCTT 
    TTGCTTGGTT ACTTGGTTCA TGCAAGGTCA CATTTCTGCT GCTTTTTATG 
    TTCAGATGGC TATAATATCT AGACTCTATC CTTGCAAAGA ATGTGCGGAA 
    CACTTCAAAG AAGTTTTAAA GTAAGAAATG CTCTCCAACC ACTAGCATAA 
    ATTATAGTAT CCATTTTGAT AGTTTGATTC CTCGAGATGT GTTTCTGTGT 
    GACAGGACTA TGTTTTGTTG AAATGTTGGT ATGTAATACA TTATCAACCT 
    TTATCCATTC ATTGTTTTAG GGCGAGATAT AACATCATGT AGGAACTATA 
    AATTCTTTGT ACTTTTGCAT TATGAAACTG TGCTTCTGGA TCTTTTATAT 
    TCTAAAGCTA TGCATCCACA AACTCGTTTA AAAACTTTTT AGTTATTTTA 
    CACCATCTGT ACCTTTTGGG AATATGATTT ACAGAAGCTA TGGTGATAAT 
    GGGATGTGGG AATTGGATGT AACAATCCAT TTATAAGCTC ATTTCTCTTA 
    TAGCTATTTT TCATTTACTT TTATGGTTAT AATGTCGTTT TTGCTGTCAT 
    AGTTTATTAT GTTCCAGTTA TATCCAGCTG CCAATTTCTG TTGTTCTGTT 
    TTTTTCTTGT GCTGCCCTTA AATTTTCATG TTTGTGCTCA ATGTAGCAAC 
    AATAAACTGT CTCGGCACAA TATTGAACTG ACTTCTTTAT GTTCTTTTTG 
    CTTAGAGCAA ATCCTGTGCA GGCAGGATCT CAGGCTGAAT TCTCTCAGTG 
    GTTATGCTAC GTGCACAATG TGGTCAATCG AAGCCTTGGA AAACCTATAT 
    TTCCTTGCCA GAGAGTAAAT GCACGGTGGG GTAAGCTGGA TTGTCCTGAA 
    CGCTCTTGTG ATCTAGAAGG CTCCAACGAC ATCATCCCGA ATAGGTGACA 
    TTAGATAGGG ATCGTTTAGA AATTCTGGAA CAGTGACAAA GTTTAAACCA 
    TCACTGGATG GGCAGCATGA AGAGCATATG GGAAAAGAAT TATAACGCCG 
    TGCCGGCATT CTTCCTATAC CCTTGTAATA CTAGTGTATC AAATGTGATT 
    TCATTTTGTT ATTTACAAGC TTCAGCTCTG

    Gene models with high sequence identity

    1. AT1G49880.1 [+] show detail - Erv1/Alr family protein
      E-value: 2e-22; Score: 104.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Erv1/Alr 0.0000013
    superfamily Erv1/Alr 0.00000000013
    HMMPfam Erv1/Alr 0.00000015
    Gene3D Erv1/Alr 0.00000098
    Gene3D Erv1/Alr 0.0000000011
    ProfileScan ERV/ALR sulphydryl oxidase 10.239
    ProfileScan ERV/ALR sulphydryl oxidase 8.653
    ProfileScan ERV/ALR sulphydryl oxidase 12.943
    HMMPanther ALR/ERV 0.000000000017
    HMMPanther ALR/ERV 3.2e-18

    See the detailed result >

    AT1G49880.1

    Model type
    Protein coding
    Short Description
    Erv1/Alr family protein
    Computational Description
    Erv1/Alr family protein; FUNCTIONS IN: thiol oxidase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ERV/ALR sulphydryl oxidase (InterPro:IPR017905), Erv1/Alr (InterPro:IPR006863); Has 843 Blast hits to 843 proteins in 218 species: Archae - 0; Bacteria - 1; Metazoa - 134; Fungi - 258; Plants - 61; Viruses - 64; Other Eukaryotes - 325 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR