K30135

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30135

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30135

Determination of introduced cDNA(s)

  • J023083J21 - Rice Full-length cDNAs - Original: J023083J21

    full reading [+] show sequence

    Nucleotide sequence: J023083J21 - full reading 
    GAGTGTTCCA GGGATCTGCA ATCTGTTGCT CTCCACTCAC CCGACTCCAA 
    ATCAACTCCG CAACCTCCCT GTGGCTCTCT TCCCATCACC AATCTCCGCC 
    ACAATCCGCT CACAAGAACA CGACGAATTC GAGCAGGACA ATCTTTGGTT 
    TCTGGAACCA ACCAGTAATC CATCCTCCTC ATCGATATAT ACTCCATACA 
    CGTCCGGGCA AGCAGAAACC AAAACGGAAA AGCTCTCGGA TTTCCCCGTC 
    CCCATCTCGT TCTGTTCCCA CTAGCCATGG CTCATCTGGT ATGGATGCTG 
    GGGGAGAACG GAGAGGAGAA GAGCTTCGAG AATCCCAACG AGTTGCTGCC 
    ACTCTCCAGA CTTGAAGAGA TCGGTGTGTT GTATTGGCAC TTGGATCCTA 
    AGAAGTCTGA AAGCGAAGAA GAGCTCACAA AAATCCGCAG AGAAAGAGGG 
    TACAGCTACT TTGATCTTAC TGAGATATGC CCTGATAAAT TGGAAAATTA 
    TGAGGAGAAG CTGAAGAGCT TCTATTGTGA GCACATTCAT GCTGATGAAG 
    AGATCCGGTA CTGCTTGGAG GGTAGCGGTT ACTTTGATGT CCGTGACAAG 
    GATGACAAAT GGATTCGGAT TTGGATAAAA GAGGGAGACA TGATCATCCT 
    GCCAGCTGGG ATTTATCATC GGTTCATCGT CGACAGCAAC AACTATATCA 
    AGCTCATGAG GCTCTTCATT GGAGAACCAG TCTGGACCGC ATACAACCGG 
    CCACAGGAAG ACCATCCTGT GAGGCAAGAG TATGTCAAGA ATGTGAAGGG 
    GGACACCGGA TTTGCTCTTG CCGCACATTG AGTTTGCTGA ATTGGGGGCT 
    CACTATACAA CTGTCCTATA CATCACACTA CTCATGAAAT CATGAACCCA 
    TGCTGTTTTT ATCATGAATC ATGAAAACAC ATATGCAGTA CACTTGAAAA 
    CTATCATATG TAGTACTACT ATCCGGCTAT CCTACAAAAA TTTTAGTACT 
    ACTTGAAACA TTGCAGTATA CACAGTGACT GGTCCTGTAC TCTTGTGCAA 
    TGTACTACAC CAAAAATTGT CTATAACAAG TCGGTTGGAT ACCCTAATGA 
    AAATATTGCT CTGTATTCCA TTTGG

    Gene models with high sequence identity

    1. AT5G43850.1 [+] show detail - RmlC-like cupins superfamily protein
      E-value: 7e-68; Score: 254.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Acireductone dioxygenase, ARD 8e-73
    HMMPfam Acireductone dioxygenase, ARD 1e-51
    Gene3D RmlC-like jelly roll fold 9.2e-61
    superfamily Cupin, RmlC-type 3.4e-43

    See the detailed result >

    AT5G43850.1

    Model type
    Protein coding
    Short Description
    RmlC-like cupins superfamily protein
    Computational Description
    ARD4; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: L-methionine salvage from methylthioadenosine, oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acireductone dioxygenase, ARD (InterPro:IPR004313), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT4G14710.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR