K30142

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30142

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30142

Determination of introduced cDNA(s)

  • J013021C17 - Rice Full-length cDNAs - Original: J013021C17

    full reading [+] show sequence

    Nucleotide sequence: J013021C17 - full reading 
    GCTCTCCCAC TCTTCCTCCT CCCCAAACCC TAGCCGCCGC CGCCGGCGTA 
    CTCGAGAGAA ACATCAGCAT CCATGGCGGG CAAGGGCGAG GGTCCGGCCA 
    TCGGCATCGA CCTTGGCACG ACCTACTCGT GCGTGGGCGT TTGGCAGCAC 
    GACCGCGTGG AGATCATCGC CAACGACCAG GGCAACCGCA CCACCCCCTC 
    CTACGTCGGC TTCACCGACT CCGAGAGGCT CATCGGAGAT GCTGCCAAGA 
    ACCAGGTCGC CATGAACCCC ATCAACACCG TCTTTGGTGC CAAGCGTCTC 
    ATTGGCAGGA GGTTTAGCGA TGCTTCTGTT CAGAGTGACA TTAAGCTCTG 
    GCCCTTCAAG GTGATTGCTG GACCTGGTGA CAAGCCTATG ATTGTTGTCA 
    AGTACAAGGG TGAGGAGAAG CAGTTTGCTG CAGAAGAGAT CTCCTCCATG 
    GTCCTCATCA AGATGCGTGA GATTGCTGAG GCCTACCTTG GCACCACCAT 
    CAAGAATGCC GTTGTCACTG TTCCTGCCTA CTTCAATGAC TCCCAGAGGC 
    AGGCCACCAA GGATGCTGGA GTGATTGCTG GTCTCAATGT CATGCGTATC 
    ATCAACGAGC CGACTGCTGC AGCTATTGCC TATGGTCTTG ATAAGAAGGC 
    CACCAGCGTT GGTGAGAAGA ATGTCCTCAT CTTTGACCTT GGAGGTGGTA 
    CCTTTGATGT CTCCCTCCTT ACCATTGAGG AGGGTATCTT TGAGGTCAAG 
    GCCACAGCTG GTGACACCCA TCTTGGTGGT GAAGATTTTG ACAATCGTAT 
    GGTCAACCAC TTTGTGCAAG AATTCAAGAG GAAGAACAAG AAGGATATCA 
    CTGGCAACCC CAGGGCTCTC AGGAGGTTGA GGACAGCTTG TGAGAGGGCA 
    AAGAGGACCC TGTCCTCCAC TGCCCAGACC ACCATTGAGA TCGATTCCCT 
    GTATGAGGGC ATCGACTTCT ACTCAACCAT CACCCGTGCC AGGTTTGAGG 
    AGCTCAACAT GGATCTCTTC AGGAAGTGTA TGGAGCCTGT GGAGAAGTGC 
    CTCAGGGATG CTAAGATGGA CAAGAGCTCT GTTCATGATG TTGTCCTTGT 
    TGGTGGCTCC ACTAGGATCC CGAGGGTGCA GCAGCTCCTG CAGGATTTCT 
    TCAACGGCAA GGAGCTTTGC AAGAACATCA ACCCAGATGA GGCTGTTGCT 
    TATGGTGCTG CTGTCCAGGC TGCCATCTTG AGTGGTGAGG GCAACGAGAA 
    GGTCCAGGAC CTCCTCCTGT TGGATGTTAC CCCTCTCTCT CTCGGTTTGG 
    AGACTGCTGG TGGTGTCATG ACCGTTTTGA TCCCAAGGAA CACCACCATT 
    CCCACCAAGA AGGAGCAGGT CTTCTCCACC TACTCCGACA ACCAGCCTGG 
    TGTGCTCATC CAGGTTTATG AGGGTGAGAG GACCAGGACA CGTGACAACA 
    ACCTGCTGGG GAAGTTTGAG CTCTCTGGAA TCCCTCCTGC TCCCAGGGGT 
    GTTCCACAGA TCACTGTTTG CTTCGACATT GATGCCAATG GTATCCTGAA 
    CGTGTCTGCT GAGGACAAGA CCACCGGGCA GAAGAACAAG ATCACCATTA 
    CCAACGACAA GGGCAGGCTT AGCAAGGAGG AGATTGAGAA GATGGTCCAG 
    GAGGCCGAGA AGTACAAGTC AGAGGATGAG GAGCACAAGA AGAAGGTGGA 
    GTCCAAGAAC GCGCTGGAGA ACTACGCCTA CAACATGCGC AACACCATCA 
    AGGATGAGAA GATCGCCTCG AAGCTCCCGG CAGCGGACAA GAAGAAGATC 
    GAGGATGCCA TCGACCAGGC CATCCAGTGG CTGGACGGCA ACCAGCTCGC 
    TGAGGCTGAT GAGTTCGATG ACAAGATGAA GGAGCTGGAG GGCATCTGCA 
    ACCCCATCAT CGCCAAGATG TACCAGGGCG CTGGCGCGGA CATGGCCGGC 
    GGCATGGACG AGGACGATGC TCCCCCGGCT GGCGGCAGCG GTGCTGGCCC 
    CAAGATCGAG GAGGTCGACT AAGCGCGAAA TTTGCTAGTG ATCCGCGCTT 
    CAAGTTATCT TATTGCATTA TTAGTGTCTC TTTTATGTTG TGTTAAAAAA 
    CTTTGCTGCT ATGACTTATG ATGATACCCT TGGTCTGTTT GGGCAGTCCT 
    TTTGAATTGA AGAACTGCGT TGGGAGCTCT ATGAGAACTA TGAATTGCGT 
    GAGAAATTTA ATTATTGTGG TGCTTGCAGC GCCTATTATT TGGTCTCTGT 
    CCCACGTTTA TTATTTGCAT GTGCGCATTG TTTGCTAGCA ATTGCTGTTG 
    TGCTTCTCAG CCAACATGTA AACTGTTTGG ATTGTTTCTG ATTTTTGGAT 
    GCATTTTTTA AAGCGGATAG TGAAGGACGG

    Gene models with high sequence identity

    1. AT5G02500.1 [+] show detail - heat shock cognate protein 70-1
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Heat shock protein Hsp70 1.3e-86
    FPrintScan Heat shock protein Hsp70 1.3e-86
    FPrintScan Heat shock protein Hsp70 1.3e-86
    FPrintScan Heat shock protein Hsp70 1.3e-86
    FPrintScan Heat shock protein Hsp70 1.3e-86
    FPrintScan Heat shock protein Hsp70 1.3e-86
    FPrintScan Heat shock protein Hsp70 1.3e-86
    FPrintScan Heat shock protein Hsp70 1.3e-86
    FPrintScan Heat shock protein Hsp70 1.3e-86
    Gene3D no description 7.5e-50
    Gene3D no description 6.2e-32
    Gene3D no description 3e-76
    HMMPfam Heat shock protein 70 1.6e-273
    HMMPfam Glutamate dehydrogenase, NAD-specific 1.6e-70
    HMMPfam Glutamate dehydrogenase, NAD-specific 1.4e-80
    superfamily Actin-like ATPase domain 1.8e-69
    superfamily Actin-like ATPase domain 6.2e-68
    superfamily Heat shock protein 70kD (HSP70), peptide-bind 1.4e-65
    superfamily Heat shock protein 70kD (HSP70), C-terminal s 7.7e-30
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    HMMPanther HEAT SHOCK PROTEIN 70 (HSP70) 0
    HMMPanther Heat shock protein Hsp70 0
    Coil coiled-coil 0

    See the detailed result >

    AT5G02500.1

    Model type
    Protein coding
    Short Description
    heat shock cognate protein 70-1
    Curator Summary
    encodes a member of heat shock protein 70 family.
    Computational Description
    heat shock cognate protein 70-1 (HSC70-1); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to cold, response to virus, response to heat; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G02490.1); Has 34264 Blast hits to 33945 proteins in 4852 species: Archae - 163; Bacteria - 16558; Metazoa - 3831; Fungi - 1761; Plants - 1266; Viruses - 306; Other Eukaryotes - 10379 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR