K30150

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30150

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30150

Determination of introduced cDNA(s)

  • J033029B07 - Rice Full-length cDNAs - Original: J033029B07

    full reading [+] show sequence

    Nucleotide sequence: J033029B07 - full reading 
    GATAAACTTT ACCACTACTC GCCCCGTGCG CTCTCCTCGT CGTCGTCGTC 
    GCCGCCGCGA GCGAACCGGG AGGAGAAAGT CCAAACCCTC GCGAAGGCAG 
    AGTCGGGGAT AGGGATATCG CCGAGGTGGG AGAAGGCGAC GTCGCCGACA 
    TGAAGCTGTT CGTGAAGACC CTGAAGGGCA CCAACTTCGA GATCGAGGCG 
    AGCCCCGAGG CGTCGGTGGC TGAGGTGAAG AGAATCATTG AGAGTACTCA 
    GGGGCAGAAT GTGTACCCGG CGGATCAGCA GATGCTCATA CACCAAGGGA 
    AAATTCTCAA GGATGATACA ACTTTGGAAG GCAACAAAGT TGCTGAGAAC 
    AGCTTCCTTG TTATAATGCT GTCTAAGGCC AAAGCATCAT CAAGTGGAGC 
    TTCAACTGCT TCAAAGGCAC CTGTGAGCCA GTCTCAACCA GCAACTCCAG 
    TTGCCTCAGT TGCAAGAACA CCACCTCCAC AAGCACCTGT TGTTACACCT 
    GAACCGGCAC CTCCAAGTGC ACAGCCTCCA GTTGCTTCTG CCACTCCAGC 
    TGCTGCTGCC ACTCCAGCTG CTGCTGTGAC CGCATCAAGT GATGCGGATG 
    TCTACAGTCA GGCTGCATCA AATCTTGTTT CAGGTAGCAA CCTAGAACAG 
    ACAATCCAAC AAATTCTTGA CATGGGTGGT GGCACCTGGG AACGTGACAT 
    GGTTGTCCGT GCTTTGCGTG CTGCATATAA CAACCCTGAG AGAGCTATTG 
    ACTATCTGTA TTCTGGAATT CCTGAGAATG TGGAGCCCCC ACAACCTGTG 
    GCTCGAGCAC CTGCTGCTGT TCAACAGGGA AATCCACAGG TTCCATCTCA 
    GGCTCAGGCT GCACCTCCAC CGCCTGTGCA GCCAGCTGGT GGTGCCTCAG 
    GACCTAATGC GAATCCTCTA AACCTATTCC CCCAGGGCAT TCCAAGTGCT 
    GGGTCAAATC CTGGTGCTGC TGCTGGTGCC GGTGCCGGTG CTGGTGCCCT 
    TGATGCATTG CGACAACTTC CACAGTTCCA AGCGCTGCTT GCATTGGTCC 
    AGGCTAATCC CCAAATCTTG CAGCCAATGC TTCAAGAGCT TGGGAAGCAG 
    AATCCGCAAA TCTTGCGGTT GATTCAGGAA AATCAGGCTG AATTTCTCCG 
    TCTGGTGAAT GAATCTCCTG ATAGCGGCGC TGCTGGGGGA AACATACTAG 
    GTCAACTAGC AGCCGCTATG CCACAGGCAC TTACAGTTAC TCCAGAGGAA 
    CGGGAGGCCA TTCAGCGGCT GGAGGCAATG GGGTTCAACC GTGAGCTCGT 
    TTGGAGGTCT TCTTCGCATG CAACAAGGAT GAAGAGCTGG CTGCCAACTA 
    TCTTTTGGAT CATGGCCATG AGTTTGAGGA TCAACAATAG GTGTTGTTAG 
    TTTGGTCTCA TCGTGGCTGG GAGACCCCAA AAAAAAAATG AAATCGAGGC 
    AGAAGCAGTG CAGTTCAGTA TCGTTATTAT TTCTGACTGC TGAGAGATAC 
    CTGGCCGTGT GTGCAATGCC GCTGACTATG TTTTAATTTC CTGTGTCTTG 
    GGAATGCTTT TAAAGTACAT ATTAATTTCA TATTCACATA TTATACTGTG 
    TATAAAAGTT GCATGTTGGC CTTGTGTGC

    Gene models with high sequence identity

    1. AT5G38470.1 [+] show detail - Rad23 UV excision repair protein family
      E-value: 4e-93; Score: 58.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr UV excision repair protein Rad23 5.8e-103
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 12.884
    ProfileScan Ubiquitin supergroup 18.606
    HMMPanther UV EXCISION REPAIR PROTEIN RAD23 6.6e-119
    HMMSmart Ubiquitin 2.5e-20
    HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 3.9e-05
    HMMSmart Heat shock chaperonin-binding 1.2e-06
    superfamily Ubiquitin-like 4.6e-24
    superfamily XPC-binding domain 1.2e-19
    superfamily UBA-like 3e-10
    superfamily UBA-like 0.0024
    FPrintScan UV excision repair protein Rad23, C-terminal 4.1e-17
    FPrintScan UV excision repair protein Rad23, C-terminal 4.1e-17
    HMMPfam XPC-binding domain 1.1e-20
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 2.2e-13
    HMMPfam Ubiquitin 1.6e-16
    Gene3D no description 3.4e-22
    Gene3D no description 2.1e-15
    Gene3D XPC-binding domain 8e-20

    See the detailed result >

    AT5G38470.1

    Model type
    Protein coding
    Short Description
    Rad23 UV excision repair protein family
    Curator Summary
    Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.
    Computational Description
    RADIATION SENSITIVE23D (RAD23D); FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: response to cold, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR