K30211

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30211

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30211

Determination of introduced cDNA(s)

  • J013097D16 - Rice Full-length cDNAs - Original: J013097D16

    full reading [+] show sequence

    Nucleotide sequence: J013097D16 - full reading 
    GTGGTGCTCA GTTTCACTCT TATCAGTGAA TTAGATCATA TACTTGTGTC 
    CTTGACAGCT CGTTAATTAG CATGGCTAGG TCTCTCGCTG CTCTCCTTCT 
    CCTTCTGGTC GCAGCCGCGG GAGCCAGCCA TGCCGCGTCG CCGGCGGAGA 
    TGTACTGGAA GATCGCGCTC CCGACCTCGC CGATGCCCGG CGCCATTCGC 
    GACCTCATCA GCCCGGCGAG CTCAGCGGCC TCAGCTTCGA AGGATAAGGA 
    GGATACGGTG GGCTCCGTGT TCTTCCTCGA GAAGGACCTC TTCCCGGGCT 
    CCAAGATGAC GCTCCACTTC ACCCGCGCCA CCGCCGGCGC CGCGCTGCTC 
    CCTCGCGGCC GCGCCGACTC CGTCCCGTTC GCCTCCGAAA AGCTCCCGGA 
    GATCCTCTCC CAGCTCTCCA TCCCCGCCGG CTCGCCGACC GCCGACGCCA 
    TGCGGTCCAC GCTCGCCGTG TGCGAGGCCG CGCGGATCGC CAGCGAGACG 
    GCGCCCAAGC ACAAGCACTA CTGCGCCACG TCGCTCGAGT CCATGGTCGA 
    GCTCGTCGCC TCCAGCCTCG GCACCCGCGA CGTCCACGCC GTGTCCACGG 
    AGGTGGTCAA CAGGGCCGGG CCGACGCCGA GGCAGGCGTA CAGGGTGGAG 
    GCCGTGAGGC CCGTGCCGGT GCCCGGGGGC GACATGGTGG CATGCCACAG 
    GATGCCCTAC GCGTACGCCG TGTTCGGGGT GCACGGGATC AAGGGCGCGG 
    CGTACACGGT GACGCTGGCC GGCGCCGACG GGACCATGGC GGAGGCGGTG 
    GCGGCGTGCC ACGGGGACGT GGACGGGCAC GGCGTGGCGG TGGCGGAGGC 
    GTACAAGAGG CTCGGCGTGG CGCCCGGGAA GGTGGCAGTC TGCCACTTCC 
    TGCCTCAGGA CGACATGCTC TGGGTGCGCA ACTGAATGAA GCAGCTACCT 
    GCGCGCCATC CATGGCTAAT TAAGCTCCTT CCTATATTTT CGATCTACCT 
    GCCGGCTGGC TATCATGTTA TCATCGCGTG TGTGTGCGCG CCGATCCGAC 
    ATGCCCACAC TACACGTCGA CACTACACGT GTTTTATTTT GTTAATTAAT 
    AAGTCTGGAC AACCAGGTCA TCTTGTACGG CACTTCTCCC CTCTGTCCCG 
    AAATAAACCA ACTTATAAAG ATTGAAGTTT GTC

    Gene models with high sequence identity

    1. AT5G25610.1 [+] show detail - BURP domain-containing protein
      E-value: 1e-38; Score: 157.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam BURP 4.7e-75
    ProfileScan BURP 78.574
    ProfileScan PROKAR_LIPOPROTEIN 6

    See the detailed result >

    AT5G25610.1

    Model type
    Protein coding
    Short Description
    BURP domain-containing protein
    Curator Summary
    responsive to dehydration 22 (RD22) mediated by ABA
    Computational Description
    RESPONSIVE TO DESSICATION 22 (RD22); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to desiccation, response to salt stress, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: unknown seed protein like 1 (TAIR:AT1G49320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR