K30228

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30228

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30228

Determination of introduced cDNA(s)

  • J033076I21 - Rice Full-length cDNAs - Original: J033076I21

    full reading [+] show sequence

    Nucleotide sequence: J033076I21 - full reading 
    GAATTATCTA GCTGATCAGC TTGCCTAGGA AGCAAGGAAT TAGCCATGGC 
    TTCTGTTTCG CCGCTACTGC TTCTCCTCTT GTGCAGCTAC CACTCTGTAG 
    TTGCTCATGC AGGAGATGGA CAGAGTTACA AGGTTCTTGA GCTGAATTCT 
    GAGGCCGTCT GCTCCGAGCG AAATGCGATT TCGTCGTCGT TGAGTGGAAC 
    CACGGTGGCG TTGAACCACC GGCACGGGCC ATGCTCGCCG GTGCCGTCGT 
    CCAAGAAGAG GCCGACCGAA GAGGAGCTGC TCAAACGCGA CCAGCTCCGA 
    GCCGAGCACA TCCAGCGGAA GTTCGCCATG AACGCCGCCG TCGATGGCGC 
    CGGCGATCTC CAGCAGTCGA AGGTGTCGTC GTCCGTGCCG CCCAAGCTGG 
    GCTCCTCCCT GGACACGCTG GAGTACGTCA TCTCCGTCGG GCTCGGCACG 
    CCGGCCGTGA CGCAGACGGT GACCATCGAC ACCGGCAGCG ACGTGTCGTG 
    GGTGCAGTGC AACCCGTGCC CCAACCCGCC GTGCTACGCG CAGACGGGCG 
    CGCTGTTCGA CCCCGCCAAG TCGAGCACCT ACAGGGCGGT CTCCTGCGCC 
    GCCGCCGAGT GCGCGCAGCT CGAGCAGCAA GGCAACGGCT GCGGCGCCAC 
    CAACTACGAG TGCCAGTACG GCGTCCAGTA CGGCGACGGC TCGACCACCA 
    ACGGCACGTA CAGCCGCGAC ACGCTGACGC TGTCCGGCGC CTCCGACGCC 
    GTGAAGGGAT TCCAGTTCGG GTGCAGCCAC GTCGAGTCGG GATTCAGCGA 
    CCAGACCGAC GGGCTCATGG GCCTCGGCGG CGGCGCGCAG TCGCTCGTGT 
    CGCAGACGGC GGCGGCGTAC GGGAATTCCT TCTCGTACTG CCTCCCGCCG 
    ACATCGGGCT CGTCCGGGTT CCTCACGCTC GGCGGCGGCG GCGGCGTGTC 
    GGGGTTCGTG ACGACGCGGA TGCTCAGGAG CAGGCAAATC CCGACGTTCT 
    ACGGCGCGAG GCTGCAGGAC ATCGCCGTGG GCGGGAAGCA GCTCGGGCTG 
    TCGCCGTCGG TGTTCGCCGC CGGGTCCGTG GTGGACTCCG GCACGATCAT 
    CACGCGGCTG CCGCCGACGG CGTACTCGGC GCTGTCGTCG GCGTTCAAGG 
    CCGGCATGAA GCAGTACCGG TCGGCGCCGG CCAGGAGCAT CCTCGACACG 
    TGCTTCGACT TCGCCGGCCA GACCCAGATC TCCATACCGA CCGTCGCGCT 
    GGTGTTCTCC GGCGGCGCCG CCATCGACCT CGACCCGAAC GGGATCATGT 
    ACGGCAACTG CCTCGCGTTC GCCGCCACCG GCGACGACGG GACCACCGGC 
    ATCATCGGGA ACGTGCAGCA GCGGACGTTC GAGGTCCTGT ACGACGTCGG 
    CAGCAGCACG CTCGGCTTCC GGTCCGGCGC GTGTTGACCG GGGCGGGCGG 
    CGCGACGCCG GCGCCTGGCG GGCCGGGCAA CACGACACAC GTAGAGGCCA 
    AGAGGGTAGC AGTAGGTTGC TCTCATGTGG TCGTCTACTT GTTTGTGGTT 
    GCGAGGTAAG AGTCGTGACG TGTGATGATG ACAAGATATA ATGATATATA 
    TTGCAATTGT AATCCAACAA CCAAAATATT ATATTAGTCC CTAGCTCTAA 
    AAAAATATTA TATTAGGAGT GAACTTTTCA TGATTTTTTA TGAATAATAA 
    AGACTTTATA CTGATTAATT CGATCGTTTG ATTCCC

    Gene models with high sequence identity

    1. AT5G10770.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 3e-70; Score: 263.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase A1 9.8e-22
    FPrintScan Peptidase A1 3.4e-05
    FPrintScan Peptidase A1 3.4e-05
    FPrintScan Peptidase A1 3.4e-05
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 1.3e-96
    HMMPanther Peptidase A1 1.3e-96
    Gene3D Peptidase aspartic, catalytic 3.7e-39
    PatternScan Peptidase aspartic, active site 0
    superfamily Peptidase aspartic 5.6e-92

    See the detailed result >

    AT5G10770.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Computational Description
    Eukaryotic aspartyl protease family protein; FUNCTIONS IN: DNA binding, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G10760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR