K30228

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30228

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30228

Determination of introduced cDNA(s)

  • J033076I21 - Rice Full-length cDNAs - Original: J033076I21

    full reading [+] show sequence

    Nucleotide sequence: J033076I21 - full reading
    GAATTATCTA GCTGATCAGC TTGCCTAGGA AGCAAGGAAT TAGCCATGGC 
    TTCTGTTTCG CCGCTACTGC TTCTCCTCTT GTGCAGCTAC CACTCTGTAG
    TTGCTCATGC AGGAGATGGA CAGAGTTACA AGGTTCTTGA GCTGAATTCT
    GAGGCCGTCT GCTCCGAGCG AAATGCGATT TCGTCGTCGT TGAGTGGAAC
    CACGGTGGCG TTGAACCACC GGCACGGGCC ATGCTCGCCG GTGCCGTCGT
    CCAAGAAGAG GCCGACCGAA GAGGAGCTGC TCAAACGCGA CCAGCTCCGA
    GCCGAGCACA TCCAGCGGAA GTTCGCCATG AACGCCGCCG TCGATGGCGC
    CGGCGATCTC CAGCAGTCGA AGGTGTCGTC GTCCGTGCCG CCCAAGCTGG
    GCTCCTCCCT GGACACGCTG GAGTACGTCA TCTCCGTCGG GCTCGGCACG
    CCGGCCGTGA CGCAGACGGT GACCATCGAC ACCGGCAGCG ACGTGTCGTG
    GGTGCAGTGC AACCCGTGCC CCAACCCGCC GTGCTACGCG CAGACGGGCG
    CGCTGTTCGA CCCCGCCAAG TCGAGCACCT ACAGGGCGGT CTCCTGCGCC
    GCCGCCGAGT GCGCGCAGCT CGAGCAGCAA GGCAACGGCT GCGGCGCCAC
    CAACTACGAG TGCCAGTACG GCGTCCAGTA CGGCGACGGC TCGACCACCA
    ACGGCACGTA CAGCCGCGAC ACGCTGACGC TGTCCGGCGC CTCCGACGCC
    GTGAAGGGAT TCCAGTTCGG GTGCAGCCAC GTCGAGTCGG GATTCAGCGA
    CCAGACCGAC GGGCTCATGG GCCTCGGCGG CGGCGCGCAG TCGCTCGTGT
    CGCAGACGGC GGCGGCGTAC GGGAATTCCT TCTCGTACTG CCTCCCGCCG
    ACATCGGGCT CGTCCGGGTT CCTCACGCTC GGCGGCGGCG GCGGCGTGTC
    GGGGTTCGTG ACGACGCGGA TGCTCAGGAG CAGGCAAATC CCGACGTTCT
    ACGGCGCGAG GCTGCAGGAC ATCGCCGTGG GCGGGAAGCA GCTCGGGCTG
    TCGCCGTCGG TGTTCGCCGC CGGGTCCGTG GTGGACTCCG GCACGATCAT
    CACGCGGCTG CCGCCGACGG CGTACTCGGC GCTGTCGTCG GCGTTCAAGG
    CCGGCATGAA GCAGTACCGG TCGGCGCCGG CCAGGAGCAT CCTCGACACG
    TGCTTCGACT TCGCCGGCCA GACCCAGATC TCCATACCGA CCGTCGCGCT
    GGTGTTCTCC GGCGGCGCCG CCATCGACCT CGACCCGAAC GGGATCATGT
    ACGGCAACTG CCTCGCGTTC GCCGCCACCG GCGACGACGG GACCACCGGC
    ATCATCGGGA ACGTGCAGCA GCGGACGTTC GAGGTCCTGT ACGACGTCGG
    CAGCAGCACG CTCGGCTTCC GGTCCGGCGC GTGTTGACCG GGGCGGGCGG
    CGCGACGCCG GCGCCTGGCG GGCCGGGCAA CACGACACAC GTAGAGGCCA
    AGAGGGTAGC AGTAGGTTGC TCTCATGTGG TCGTCTACTT GTTTGTGGTT
    GCGAGGTAAG AGTCGTGACG TGTGATGATG ACAAGATATA ATGATATATA
    TTGCAATTGT AATCCAACAA CCAAAATATT ATATTAGTCC CTAGCTCTAA
    AAAAATATTA TATTAGGAGT GAACTTTTCA TGATTTTTTA TGAATAATAA
    AGACTTTATA CTGATTAATT CGATCGTTTG ATTCCC

    Gene models with high sequence identity

    1. AT5G10770.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 3e-70; Score: 263.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase A1 9.8e-22
    FPrintScan Peptidase A1 3.4e-05
    FPrintScan Peptidase A1 3.4e-05
    FPrintScan Peptidase A1 3.4e-05
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 1.3e-96
    HMMPanther Peptidase A1 1.3e-96
    Gene3D Peptidase aspartic, catalytic 3.7e-39
    PatternScan Peptidase aspartic, active site 0
    superfamily Peptidase aspartic 5.6e-92

    See the detailed result >

    AT5G10770.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Computational Description
    Eukaryotic aspartyl protease family protein; FUNCTIONS IN: DNA binding, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G10760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR