K30233

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30233

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30233

Determination of introduced cDNA(s)

  • J013098C23 - Rice Full-length cDNAs - Original: J013098C23

    full reading [+] show sequence

    Nucleotide sequence: J013098C23 - full reading 
    TTGGGCCAAA CCGCGAACAC GGTAAGCCAT CTGATCAGTG GCTCGCCGTC 
    GCCGCTGCTC CTCTCCAACT CCAACCTCGC ATCACTCCAT GCGCGAGCTC 
    GAGCTCAGCT GAGTGGACGA TGGAATGAGG CTCGTGGCTG CCAAACCTTG 
    CTGCCTCTTC CGAATCTCAA GCGTCGCCGC CGTTGCAGCC GGTCGCCGCC 
    GGCCATGGCG AGCCGCGGCG GCGAGCGGCA ATGCGCACGC CGAAGCCGAA 
    GGCGATGAGG ACGGCCAATC GCTGTCGGCG AGGGCGAGGG GCAGGCGGGC 
    GCGGCTGTCG GCGAGGCGGC GGGAGAGGAT CGTGGTGGTG GAGGGCGGCG 
    GCGTTGGGGG CATCGGCGAG TTCCTGCGTC AGCCCGCCGG CGTGGAGTCG 
    CTGCTGAACA CGAGGGCGCT GCAGAGCTTC GCGGCGGTGG ACGAGGCGCC 
    GGGGGCGAAC ACGTTCCGGT GCACGCTGCA GAGCATCGGC TTCCTCGGGT 
    TCCAGGTCGC CCCCGTCCTC GACCTCCGCG TCGCCCCGAC ATGCCACGAC 
    TGCACCGTCG AGATGCTCTC CTGCAGGTTT GAGGGTTCAG GCTCAGTTGA 
    GCAGCAGAAT GAGCTCTTTT CAGCTTTTAT GAGCAACCAT ATAACTTGGA 
    AAGACGATGG TGAGGAACCA TGCTTGGACA TTGATGTCAA TTTGGAGGTC 
    ACTCTGGAGG TTTACACGAA GCCATTCAGC ATGCTTCCAT TGTCAGCAGT 
    GGAGACACCA GGCAACCTGC TGATGCAAGG CCTCCTGGGC AGGCTCGTGC 
    CCTTGCTGGG GGAGCAGCTG CTGAGAGACT ACCATTCGTG GGTTCAGCTT 
    CAGCAGCAGC AGCCTGAAAT TTCCTCATTA GAAACTGCTG AAATCGATGC 
    TTCATAGTCG GATGGCTTCA TCGAATTCAG AGATTTTTAG CGAGACGAAA 
    GAATTCTGAG AAAATATGTT GGATGGTTTG GAGAAAAATT GGTTGCCGAT 
    GTAACTAAAA ATTGCAGTTT GTAATATAGT TCCATTATGA CTGCTTCAGT 
    GAAACTCAGG CATCAAACTG CACAGCTT

    Gene models with high sequence identity

    1. AT4G31115.2 [+] show detail - Protein of unknown function (DUF1997)
      E-value: 2e-46; Score: 183.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G31115.2

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1997)
    Computational Description
    Protein of unknown function (DUF1997); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1997 (InterPro:IPR018971); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1997) (TAIR:AT5G04440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR