K30301

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30301

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30301

Determination of introduced cDNA(s)

  • J013087D08 - Rice Full-length cDNAs - Original: J013087D08

    full reading [+] show sequence

    Nucleotide sequence: J013087D08 - full reading 
    TTGGGCAAAG AAAAGGAGAA GAGTGCCCTC TAACTTACCT ATGCCTTCCT 
    CCAAAATCCT GATATCTTGA GCCACTTGTT GCTGCCACTC TGCCATAAGC 
    TTCCATCCTA TCAAGCACCA ATATATGAGC CACTATAGAC TGTACACTCG 
    CAGCAATCCC ACTCTTGAGC ACTGAATCAC CAAGAGGATT ACCTGTGTAG 
    GTGTTGTGTG CTGTGGAAGT TTCTTGGGAG GGCAAGCTGT GCAGATTGCA 
    TAGCTTCAGT TTCTGCATTG ATTCAATGGG GAGACATTCC TGCTGCTACA 
    AGCAGAAGCT GAGGAAGGGG CTCTGGTCAC CTGAGGAGGA TGAGAAGCTC 
    ATGAACCACA TAACCAAGCA TGGCCATGGC TGCTGGAGCA CCGTTCCAAA 
    ACTTGCAGGG CTTCAGAGAT GTGGCAAAAG CTGCAGGCTG AGATGGATAA 
    ACTACTTGAG GCCTGACCTA AAGAGAGGTG CATTCTCTCA GGAGGAAGAG 
    GACCTCATCG TTGAGCTCCA TGCTGTTCTG GGAAACAGGT GGTCTCAAAT 
    TGCAACACGG CTGCCTGGAA GAACTGACAA TGAGATCAAG AATCTCTGGA 
    ATTCATGCAT CAAGAAGAAG CTGCGGCAGA AAGGCATTGA CCCAAACACC 
    CACAAGCCCC TTGCCGAGGT TGATCGAAGC AAAGCAACTC CCACCATCAG 
    CAATGACAGG ACCTCTGAAT CCAGCGATGT TGACCCATCT AGTGGCGTTG 
    CTCTTCACAA CTTGAGCCAT CTTCTGAGCG AGACGGCGCA ATCATCAGAG 
    CTGCTGCCAG TGAAGGTAAC TAAACCTCGC ACACAAGCTC CGGGCTTGGC 
    ACGTCTGAAG GTGCCACCGA AGGAACTATT TCTAGACCAG CTTACTTCTG 
    GCCATGAGAA CCTCCCTAGC TGCCGTTCAT CTGGCCCAAT TCCCAATTTC 
    CCGTTCCAGC AGCTGTTGTG CTACAATAAT GATTTTAACA GCATGGACGT 
    TGGAAACAGG AATTCACTCT GGTATAACCA GAATGAGTCC AGTAGCAGCA 
    CAATTTCCAC TGTGATGCCC CCAGTTTCAC CATCAACTCT CTCGACATCA 
    ACAGGCCTTA ATCCATCACC AGACAATGCA AACTCTCGAG GCACTGGCAT 
    CCACAATTCC CAATTCTATT GGGACACCAA CAATCCTAGC AGCAGTAGCA 
    GTACAGGGAG TAGTGGTAAC AACGGGTTGG GATTCGAGCT GCAAAGCACA 
    AGCTCCCTTT TGGAGACCAA CATATTCCCA TGGTCAGATT TAGCACCAGA 
    AAAGGATAGC CAAGCACAAC TAGAGGAAGA ACTCAAGTGG CCTGACTTGC 
    TCCATGGAAC GTTCTCAGAG ATGCCAGCGC CCATGCAGAA CCTTAGCCAG 
    TCACTGTATG AAGACGTTGT CAAAGCAGAG AGCCAATTCA ACATGGAGGG 
    GCTCTGTGCA GCTTGGTCTC AAAACCTGCT GCCACAGCAA CATCTTCCAG 
    TAGTATCAGA TATGTATGAC AAGGATTTGC AAAGGATGTC CTTGTCTTTT 
    GAGAATATCT AGGAACCATG TTCCAGCATG CAGGGAACAG AGCACCACAT 
    GAAAATTGAG AGTTGAAAGC TTAGGAAGCA CAATGTTTCT TCAGAGATAC 
    GTTTACAGTG TACTCAGTTG TTTGTGGATA AATTATTGTG AGTGTTCAC

    Gene models with high sequence identity

    1. AT1G09540.1 [+] show detail - myb domain protein 61
      E-value: 1e-74; Score: 277.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart SANT, DNA-binding 6.5e-12
    HMMSmart SANT, DNA-binding 6.5e-13
    Gene3D Homeodomain-related 4.2e-16
    Gene3D Homeodomain-related 5.2e-17
    HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 2.6e-104
    HMMPanther Myb transcription factor 2.6e-104
    HMMPfam Myb, DNA-binding 2.7e-15
    HMMPfam Myb, DNA-binding 8.8e-13
    HMMPfam Protein of unknown function DUF3651 4.4e-10
    superfamily Homeodomain-like 1.7e-23
    superfamily Homeodomain-like 8.4e-12
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 25.601
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 18.396

    See the detailed result >

    AT1G09540.1

    Model type
    Protein coding
    Short Description
    myb domain protein 61
    Curator Summary
    Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.
    Computational Description
    myb domain protein 61 (MYB61); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 50 (TAIR:AT1G57560.1); Has 8976 Blast hits to 8269 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 766; Fungi - 514; Plants - 5880; Viruses - 4; Other Eukaryotes - 1812 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR