K30304

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30304

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30304

Determination of introduced cDNA(s)

  • J033044A13 - Rice Full-length cDNAs - Original: J033044A13

    full reading [+] show sequence

    Nucleotide sequence: J033044A13 - full reading
    GGCACATCAC GAACCGGACC AAACCTCCGC CGCCGCCCGC CGCCGCCGCC 
    GCCGCCTACA CAACCCCCCC TCGCCCCCCG CCGCGCCCTC CTCTCCGTAC
    GTGGAGCGCA TGCAAATCCC CTCGCGCTCG ATTCTTCGCC TCCTCCGACG
    CCCCATCGTC GCGCCTTATT CTGCCCTGCG GCACCGCATC TCGATCCCCT
    CCCGCGATCT CTCCTCTCCT CCATGGCTAC CTCTGGTCCG GCTCGCGGGT
    GGCTACCGGC GCTTGCGCGA AGAATCGCTT CAGTCACGGG GACGCTTAAC
    CCTCCTGCCA GTCGTGTTTC TCGATTTCCT GGATCTCGGA ACATGGCCAG
    CGGCAGTGGA GTGGAAGGCG AGGGATTGGG TATACCATAC AGGCGCCGCT
    TCATCCCATT TGCCAACGAT CCTATCCACA CAACCAAAGA TAATATCATT
    TCTATGGACA AGCACCTTCC CATCACCCAA GGCAAGGACA GTGCTGCAAC
    TAAGGAGTTC ATCTCTTGTT ATGACCATTG CCGTCCTACC ACGTATGGCG
    ATGAAGATGC TTCTAGGACA GCTGTGGAGG TCACCGGTGG TAAACAAGAT
    CCAAGGGGGG CAGTTCAGAA CCTAATAGAT GGTGAAGTGG CAGTTCAGGA
    GCTAATAGAT GGTGAAGAAA TTGCAAGGAA CCAAAGGGCC AGTGAGGTTA
    GTGACAACGA TGGATATGAA GAGTTCAATG ATCGTGCTGT TAACTACCAC
    TGTGACTGTC ATGTTTGGAC GCCACTTATT GCAAGCAGCC ACCGTGACGG
    TTCTATATAC GATACCAGGG GCACCTTTGG ATCTGGGTGG AAATGGGATT
    ATCGTATTGC AGATCGTAAC GAGACTCGGT TGGAGGCAAT GATGTTATCA
    CATCCCACGA AAGATTGCTA CATGAGGGAT GGAACTTGCA TATGGCATCC
    TGCAAATGGC ATGTTGCAAA TTTTCTCAGT AAAGTTGGCT AAAACTCCTG
    TAGTTGATGG CTCAATTGAA TTGTATGGAT ACATTGCTGT GCGGGACCTT
    CAGGATCCAT TACTTAATTA TATAGTCAAA ATTGGCAGGG ATGATCCCAT
    CATTGTGGAG CAGGGTTCCC TCATCGAAAT GACTGGCCCT AAGCGAGGGA
    TCGACTTTTC TTGTGCTGTT CTAGTTGAAT ATGACATGAG AATCAAGACA
    GGAGAACGAG AGGAAGATGA TCTACAACTG ATTGATGGTG CAACAGATCT
    TGACCATATA TTGACATCAC ATGTACCAGT GAGAAATCGC ATTTATGGAG
    ATTGCGGCGC AGTTGACATA ACTCAAGCGA ATCTTTTGTA TGCATTTGAG
    GCGACTGTAG AAGTCGTCAT ATCAGAAGTG CAGACTAGTT TTGATTTGTG
    TCTCAGCTGT TTTACCAGTG GGTTACATGA GGAAATTCGG CTCTTTGATG
    GTGCGATCAG TGAGTCACGT GACTTGAGGA GGTATGTGAT TGCTGTCATG
    GAACATGAGT GTATGGATTT GAAGTTCAAG GTAGGTTTAG GGTCTGGGTG
    TTTCGCTGAA CATTGTCGAT CCTTCAAAGC AACTAATCAT GGATGTGCCA
    GTGAACAAAT AAAGATTGAG TTCGCCTCAA TCTCGGTGAA GGTCACTTGG
    TCGGCTATGG AGTTCTAGAA GGGTACTTAG CGTTTGGACA TTTTTTTTTG
    TTACTCCCTC AGTTCTATAT TGTAAGACTT TCTAGCATGT TCATATTCAT
    CTAGATAGAT AGATAGTGTG AAGCTAGTGT TGCTAGTGTT GAGTGTAGGC
    ATGTGTGTGT TTCAGCCCAA CAGGGCCCAT TACACCAATG CATATGTATA
    GTAGAAGAGA GAGGAAATAG TGTGAAGCTT CTGGAGAAAA ACAATCACCT
    AGCAACATGG TATCAGAGGG CGACCGCGTC GAGGCTAAAC CCTAGCTAGC
    GGCGCGCCGG TTTGTGGTGC TGCAGCTTGG AGCAACGGAG TGGTGGCGTT
    GACAGCGGAG ACGGCGACAG CTGCTACAGA GGATCTCGAC GCAGCCGGCG
    TGAAGGAGGG AGCAGGGTGT GCGCTCGCTG GTTGAGCCGC GCAAGGGGAG
    GACGCACGGC GGGTGAGAGG CGCACTGTAC GAGCTGCGTC TAGACTTGGC
    TGTGGTAGTG TTCCCGACCA TTATGGGTCT AGACTTGGCT ATGGATACAA
    AAGCACAAGC TACCGTCATC TCGGAAATGC ATGCCAACTG TTTAGAGTTG
    AGCCATGGAG CCATGGTGTC CATACTAGCA ATCCTGATGT CTTGTCAATA
    CCAATATCTA AAATGGCCAG TGTCAAGGCT GCTAACAACA TCACCATCGA
    ACCAGTGGTT CAGTATGTTG ATAAAGAGCT GGACAAGGCA TCCAATAGGG
    ATAAAGGGGC CAAAGGCAAC AGAGGTATGG TGGTGGCTGA TCATTTCCAA
    CTGTGGCCAT CTCCTTATCA GCTTAATTGT GAATGTTCTC ACACTGAGCA
    GCAACCATGG CCACCGCCTA CTCAAGCAGG AGACATTGGT TGTCAAGTTG
    CGCTGCGACG AGTGCTAGGG TCATCATCCA AATGCAGCCA AGGTGACTTA
    ATGCCGGTGA CACCACCAAG GCCACTGACA ATAGGAAAAT TGCATAACTC
    GAGGAGCCGT TCTGCTGGAA ACACAACTGA AGCCGTACAA TCAATTATTG
    AGTCTCATGC AATATCTTTA CACTGTAGAA TTTCCAAGTC AATGTGCATT
    GCACTTAATT TTGTTGAGAG CTGGCTACAA AACACAGCCA AGAAATTATG
    CAATGGCCAG TTGCTTAACC TTTCAGTTGG GATACATTTT GACGAC

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >

  • J033115O22 - Rice Full-length cDNAs - Original: J033115O22

    full reading [+] show sequence

    Nucleotide sequence: J033115O22 - full reading
    GAAGGCCTTC GTCTCGACAC GTTTGCATTG CAGCAGCTCA TAAGTTTCTT 
    CTTCGTTTCT GCTCCCAGTG CTAAGGCAGC ACAGTCGTTC GTCGCCATGC
    CAGGGCTCAC CATCGGCGAC ACCGTCCCCA ACCTGGAGCT GGACTCCACC
    CACGGCAAGA TCCGCATCCA CGACTTCGTC GGCGACACCT ATGTCATCCT
    CTTCTCCCAC CCCGGCGACT TCACCCCGGT CTGCACCACG GAGCTGGCAG
    CCATGGCCGG CTACGCCAAG GAGTTCGACA AGAGGGGCGT CAAGCTGCTC
    GGCATCTCCT GCGACGACGT GCAGTCTCAC AAGGACTGGA TCAAGGACAT
    CGAGGCCTAC AAGCCTGGGA ACCGCGTGAC GTACCCGATC ATGGCCGATC
    CGAGCCGCGA GGCCATCAAG CAGCTGAACA TGGTCGACCC GAACGAGAAG
    GATTCCAACG GCGGCCACCT CCCGTCCCGC GCGCTGCACA TCGTCGGCCC
    CGACAAGAAG GTGAAGCTGA GCTTCCTGTA CCCGGCGTGC GTGGGGCGGA
    ACATGGATGA GGTGGTGCGT GCGGTCGACG CGCTGCAGAC GGCGGCGAAG
    CACGCGGTGG CGACGCCGGT GAACTGGAAG CCCGGCGAGC GCGTCGTCAT
    CCCTCCCGGC GTCTCCGACG ACGAGGCGAA GGAGAAGTTC CCCCAGGGGT
    TCGACACCGC CGACCTGCCG TCCGGCAAGG GCTACCTCCG CTTCACCAAG
    GTCGGCTAGA TCATATCGAT ATCGACCTCG CTCTTCGTAC ATCATGTGCG
    CCACGCGTGC GTGATAGCGT GTGCTGGCGT GATGACTATG CGAGATGCAT
    CCCTGTGTGT GTTGGTGTGG ATAATGCCGC TACGTTTGGA ACAGTAGTGC
    ATTTACTCTG TGCTACTGTC TGAACTTTGG CTGTTTGGCA GACTGTTTAT
    GTACCCGTAT GTTCGCCCCT GTACTAATAG AGTGGGTGTT GTGGTTGGCA
    AGTACTCTCC TCGGACAACA TTTAACTTTG ACTACTAATA ACAAACAAAT
    TAAAAAGATC AATCAGATGT TACTAGACAT CTTAATTTTA TT

    Gene models with high sequence identity

    1. AT1G48130.1 [+] show detail - 1-cysteine peroxiredoxin 1
      E-value: 6e-88; Score: 321.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 17.208
    Gene3D Thioredoxin fold 1.3e-54
    HMMPfam Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 7e-32
    HMMPfam Peroxiredoxin, C-terminal 0.000000000000011
    superfamily Thioredoxin-like fold 2.5e-63
    HMMPanther PEROXIREDOXIN 6 RELATED 1.9e-127
    HMMPanther PEROXIREDOXIN 1.9e-127

    See the detailed result >

    AT1G48130.1

    Model type
    Protein coding
    Short Description
    1-cysteine peroxiredoxin 1
    Curator Summary
    encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
    Computational Description
    1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR