K30304

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30304

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30304

Determination of introduced cDNA(s)

  • J033044A13 - Rice Full-length cDNAs - Original: J033044A13

    full reading [+] show sequence

    Nucleotide sequence: J033044A13 - full reading 
    GGCACATCAC GAACCGGACC AAACCTCCGC CGCCGCCCGC CGCCGCCGCC 
    GCCGCCTACA CAACCCCCCC TCGCCCCCCG CCGCGCCCTC CTCTCCGTAC 
    GTGGAGCGCA TGCAAATCCC CTCGCGCTCG ATTCTTCGCC TCCTCCGACG 
    CCCCATCGTC GCGCCTTATT CTGCCCTGCG GCACCGCATC TCGATCCCCT 
    CCCGCGATCT CTCCTCTCCT CCATGGCTAC CTCTGGTCCG GCTCGCGGGT 
    GGCTACCGGC GCTTGCGCGA AGAATCGCTT CAGTCACGGG GACGCTTAAC 
    CCTCCTGCCA GTCGTGTTTC TCGATTTCCT GGATCTCGGA ACATGGCCAG 
    CGGCAGTGGA GTGGAAGGCG AGGGATTGGG TATACCATAC AGGCGCCGCT 
    TCATCCCATT TGCCAACGAT CCTATCCACA CAACCAAAGA TAATATCATT 
    TCTATGGACA AGCACCTTCC CATCACCCAA GGCAAGGACA GTGCTGCAAC 
    TAAGGAGTTC ATCTCTTGTT ATGACCATTG CCGTCCTACC ACGTATGGCG 
    ATGAAGATGC TTCTAGGACA GCTGTGGAGG TCACCGGTGG TAAACAAGAT 
    CCAAGGGGGG CAGTTCAGAA CCTAATAGAT GGTGAAGTGG CAGTTCAGGA 
    GCTAATAGAT GGTGAAGAAA TTGCAAGGAA CCAAAGGGCC AGTGAGGTTA 
    GTGACAACGA TGGATATGAA GAGTTCAATG ATCGTGCTGT TAACTACCAC 
    TGTGACTGTC ATGTTTGGAC GCCACTTATT GCAAGCAGCC ACCGTGACGG 
    TTCTATATAC GATACCAGGG GCACCTTTGG ATCTGGGTGG AAATGGGATT 
    ATCGTATTGC AGATCGTAAC GAGACTCGGT TGGAGGCAAT GATGTTATCA 
    CATCCCACGA AAGATTGCTA CATGAGGGAT GGAACTTGCA TATGGCATCC 
    TGCAAATGGC ATGTTGCAAA TTTTCTCAGT AAAGTTGGCT AAAACTCCTG 
    TAGTTGATGG CTCAATTGAA TTGTATGGAT ACATTGCTGT GCGGGACCTT 
    CAGGATCCAT TACTTAATTA TATAGTCAAA ATTGGCAGGG ATGATCCCAT 
    CATTGTGGAG CAGGGTTCCC TCATCGAAAT GACTGGCCCT AAGCGAGGGA 
    TCGACTTTTC TTGTGCTGTT CTAGTTGAAT ATGACATGAG AATCAAGACA 
    GGAGAACGAG AGGAAGATGA TCTACAACTG ATTGATGGTG CAACAGATCT 
    TGACCATATA TTGACATCAC ATGTACCAGT GAGAAATCGC ATTTATGGAG 
    ATTGCGGCGC AGTTGACATA ACTCAAGCGA ATCTTTTGTA TGCATTTGAG 
    GCGACTGTAG AAGTCGTCAT ATCAGAAGTG CAGACTAGTT TTGATTTGTG 
    TCTCAGCTGT TTTACCAGTG GGTTACATGA GGAAATTCGG CTCTTTGATG 
    GTGCGATCAG TGAGTCACGT GACTTGAGGA GGTATGTGAT TGCTGTCATG 
    GAACATGAGT GTATGGATTT GAAGTTCAAG GTAGGTTTAG GGTCTGGGTG 
    TTTCGCTGAA CATTGTCGAT CCTTCAAAGC AACTAATCAT GGATGTGCCA 
    GTGAACAAAT AAAGATTGAG TTCGCCTCAA TCTCGGTGAA GGTCACTTGG 
    TCGGCTATGG AGTTCTAGAA GGGTACTTAG CGTTTGGACA TTTTTTTTTG 
    TTACTCCCTC AGTTCTATAT TGTAAGACTT TCTAGCATGT TCATATTCAT 
    CTAGATAGAT AGATAGTGTG AAGCTAGTGT TGCTAGTGTT GAGTGTAGGC 
    ATGTGTGTGT TTCAGCCCAA CAGGGCCCAT TACACCAATG CATATGTATA 
    GTAGAAGAGA GAGGAAATAG TGTGAAGCTT CTGGAGAAAA ACAATCACCT 
    AGCAACATGG TATCAGAGGG CGACCGCGTC GAGGCTAAAC CCTAGCTAGC 
    GGCGCGCCGG TTTGTGGTGC TGCAGCTTGG AGCAACGGAG TGGTGGCGTT 
    GACAGCGGAG ACGGCGACAG CTGCTACAGA GGATCTCGAC GCAGCCGGCG 
    TGAAGGAGGG AGCAGGGTGT GCGCTCGCTG GTTGAGCCGC GCAAGGGGAG 
    GACGCACGGC GGGTGAGAGG CGCACTGTAC GAGCTGCGTC TAGACTTGGC 
    TGTGGTAGTG TTCCCGACCA TTATGGGTCT AGACTTGGCT ATGGATACAA 
    AAGCACAAGC TACCGTCATC TCGGAAATGC ATGCCAACTG TTTAGAGTTG 
    AGCCATGGAG CCATGGTGTC CATACTAGCA ATCCTGATGT CTTGTCAATA 
    CCAATATCTA AAATGGCCAG TGTCAAGGCT GCTAACAACA TCACCATCGA 
    ACCAGTGGTT CAGTATGTTG ATAAAGAGCT GGACAAGGCA TCCAATAGGG 
    ATAAAGGGGC CAAAGGCAAC AGAGGTATGG TGGTGGCTGA TCATTTCCAA 
    CTGTGGCCAT CTCCTTATCA GCTTAATTGT GAATGTTCTC ACACTGAGCA 
    GCAACCATGG CCACCGCCTA CTCAAGCAGG AGACATTGGT TGTCAAGTTG 
    CGCTGCGACG AGTGCTAGGG TCATCATCCA AATGCAGCCA AGGTGACTTA 
    ATGCCGGTGA CACCACCAAG GCCACTGACA ATAGGAAAAT TGCATAACTC 
    GAGGAGCCGT TCTGCTGGAA ACACAACTGA AGCCGTACAA TCAATTATTG 
    AGTCTCATGC AATATCTTTA CACTGTAGAA TTTCCAAGTC AATGTGCATT 
    GCACTTAATT TTGTTGAGAG CTGGCTACAA AACACAGCCA AGAAATTATG 
    CAATGGCCAG TTGCTTAACC TTTCAGTTGG GATACATTTT GACGAC

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >

  • J033115O22 - Rice Full-length cDNAs - Original: J033115O22

    full reading [+] show sequence

    Nucleotide sequence: J033115O22 - full reading 
    GAAGGCCTTC GTCTCGACAC GTTTGCATTG CAGCAGCTCA TAAGTTTCTT 
    CTTCGTTTCT GCTCCCAGTG CTAAGGCAGC ACAGTCGTTC GTCGCCATGC 
    CAGGGCTCAC CATCGGCGAC ACCGTCCCCA ACCTGGAGCT GGACTCCACC 
    CACGGCAAGA TCCGCATCCA CGACTTCGTC GGCGACACCT ATGTCATCCT 
    CTTCTCCCAC CCCGGCGACT TCACCCCGGT CTGCACCACG GAGCTGGCAG 
    CCATGGCCGG CTACGCCAAG GAGTTCGACA AGAGGGGCGT CAAGCTGCTC 
    GGCATCTCCT GCGACGACGT GCAGTCTCAC AAGGACTGGA TCAAGGACAT 
    CGAGGCCTAC AAGCCTGGGA ACCGCGTGAC GTACCCGATC ATGGCCGATC 
    CGAGCCGCGA GGCCATCAAG CAGCTGAACA TGGTCGACCC GAACGAGAAG 
    GATTCCAACG GCGGCCACCT CCCGTCCCGC GCGCTGCACA TCGTCGGCCC 
    CGACAAGAAG GTGAAGCTGA GCTTCCTGTA CCCGGCGTGC GTGGGGCGGA 
    ACATGGATGA GGTGGTGCGT GCGGTCGACG CGCTGCAGAC GGCGGCGAAG 
    CACGCGGTGG CGACGCCGGT GAACTGGAAG CCCGGCGAGC GCGTCGTCAT 
    CCCTCCCGGC GTCTCCGACG ACGAGGCGAA GGAGAAGTTC CCCCAGGGGT 
    TCGACACCGC CGACCTGCCG TCCGGCAAGG GCTACCTCCG CTTCACCAAG 
    GTCGGCTAGA TCATATCGAT ATCGACCTCG CTCTTCGTAC ATCATGTGCG 
    CCACGCGTGC GTGATAGCGT GTGCTGGCGT GATGACTATG CGAGATGCAT 
    CCCTGTGTGT GTTGGTGTGG ATAATGCCGC TACGTTTGGA ACAGTAGTGC 
    ATTTACTCTG TGCTACTGTC TGAACTTTGG CTGTTTGGCA GACTGTTTAT 
    GTACCCGTAT GTTCGCCCCT GTACTAATAG AGTGGGTGTT GTGGTTGGCA 
    AGTACTCTCC TCGGACAACA TTTAACTTTG ACTACTAATA ACAAACAAAT 
    TAAAAAGATC AATCAGATGT TACTAGACAT CTTAATTTTA TT

    Gene models with high sequence identity

    1. AT1G48130.1 [+] show detail - 1-cysteine peroxiredoxin 1
      E-value: 6e-88; Score: 321.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 17.208
    Gene3D Thioredoxin fold 1.3e-54
    HMMPfam Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 7e-32
    HMMPfam Peroxiredoxin, C-terminal 1.1e-14
    superfamily Thioredoxin-like fold 2.5e-63
    HMMPanther PEROXIREDOXIN 6 RELATED 1.9e-127
    HMMPanther PEROXIREDOXIN 1.9e-127

    See the detailed result >

    AT1G48130.1

    Model type
    Protein coding
    Short Description
    1-cysteine peroxiredoxin 1
    Curator Summary
    encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
    Computational Description
    1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR