K30309

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30309

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30309

Determination of introduced cDNA(s)

  • J023029M13 - Rice Full-length cDNAs - Original: J023029M13

    full reading [+] show sequence

    Nucleotide sequence: J023029M13 - full reading 
    GGATCAGGTA GCCAAACCAC ACCACCATAA AGCTAGCTTG CAAAGGGGAT 
    AGAGTAGTAG AGAGAGAGAG AGAGGAGAGG AGGAGGAAGA AGATGGGGAG 
    GGGGAAGGTG GAGCTGAAGC GGATCGAGAA CAAGATCAGC CGGCAGGTGA 
    CGTTCGCCAA GCGCAGGAAC GGCCTGCTCA AGAAGGCCTA CGAGCTCTCC 
    CTCCTCTGCG ACGCCGAGGT CGCCCTCATC ATCTTCTCCG GCCGCGGCCG 
    CCTCTTCGAG TTCTCCAGCT CATCATGCAT GTACAAAACC TTGGAGAGGT 
    ACCGCAGCTG CAACTACAAC TCACAGGATG CAGCAGCTCC AGAAAACGAA 
    ATTAATTACC AAGAATACCT GAAGCTGAAA ACAAGAGTTG AATTTCTTCA 
    AACCACACAG AGAAATATTC TTGGTGAGGA TTTGGGCCCA CTAAGCATGA 
    AGGAGCTGGA GCAGCTTGAG AACCAGATAG AAGTATCCCT CAAACAAATC 
    AGGTCAAGAA AGAACCAAGC ACTGCTTGAT CAGCTGTTTG ATCTGAAGAG 
    CAAGGAGCAA CAGCTGCAAG ATCTCAACAA AGACTTGAGG AAAAAGTTAC 
    AGGAAACCAG TGCAGAGAAT GTGCTCCATA TGTCCTGGCA AGATGGTGGT 
    GGGCACAGCG GTTCTAGCAC TGTTCTTGCT GATCAGCCTC ATCACCATCA 
    GGGTCTTCTC CACCCTCACC CAGATCAGGG TGACCATTCC CTGCAGATTG 
    GGTATCATCA CCCTCATGCT CACCATCACC AGGCCTACAT GGACCATCTG 
    AGCAATGAAG CAGCAGACAT GGTTGCTCAT CACCCCAATG AACACATCCC 
    ATCCGGCTGG ATATGATGTG TGTGTTCAGT TCAGGCTTCA GGCTTCAGAG 
    AAGCCAATGC AAACAGTGTC CTGTAATCCA GTAATTACAG GGCATATGTA 
    ATGTAATGTA ATGTAATCCC TGATCTATAT TTTGCTAAGT ACGTGCGTGC 
    TCTCTTACGA CCTTCTCCCC CAAACAGTTA ATCAGGGGAA TAATAATTTC 
    GTTTGATGCA CATACTGTAT GTCTGTATCT GTCACTGTAT CGTAGGACCG 
    TCCATGTATA ACAATTTCCG TTTTGGATGT GGTAACAAGT TAATTGGCAC 
    TT

    Gene models with high sequence identity

    1. AT5G15800.1 [+] show detail - K-box region and MADS-box transcription factor family protein
      E-value: 9e-56; Score: 214.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Transcription factor, MADS-box 8.7e-32
    HMMPfam Transcription factor, K-box 2.4e-28
    HMMPfam Transcription factor, MADS-box 1e-25
    Coil coiled-coil 0
    Coil coiled-coil 0
    ProfileScan Transcription factor, MADS-box 32.52
    ProfileScan Transcription factor, K-box 15.712
    HMMSmart Transcription factor, MADS-box 3.7e-39
    PatternScan Transcription factor, MADS-box 0
    HMMPanther MADS BOX PROTEIN 1.2e-111
    HMMPanther MADS BOX PROTEIN 1.2e-111
    FPrintScan Transcription factor, MADS-box 7.3e-31
    FPrintScan Transcription factor, MADS-box 7.3e-31
    FPrintScan Transcription factor, MADS-box 7.3e-31

    See the detailed result >

    AT5G15800.1

    Model type
    Protein coding
    Short Description
    K-box region and MADS-box transcription factor family protein
    Curator Summary
    Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.
    Computational Description
    SEPALLATA1 (SEP1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT3G02310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR