K30322

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30322

Determination of introduced cDNA(s)

J013111I12 - Rice Full-length cDNAs - Original: J013111I12

full reading [+] show sequence

GTACTCCCCA TTCCGTCCGT GCCTCCCCCT AACCCCAACC CGCCTCCAGC 
TTCGCGCCGC CTCCAAACCC CCACAGTCCG CCGCCGGCGG CCATGCTCCT 
CCACCACCGC CTCCTACCTC GCCTCCTCCT TTCCCCCTCG ACCCCGGTCA 
CCACCACCCT GCTCGTCCAC CGCACCTCCC TCTTCCCGAC CCGCCGCATC 
CTCTCGCCCT GCTGCTCCGC GCTCTCCCAA GTGGCGGCGG CGCCGGAAAC 
CGTCGACCAC TCCGACGGCG ACGAGCCCCA GGGGGATGTG CAGGTTCAGC 
TACCTCTCGA CCGGCTCTTC GTGCCGCCCG GGGCGAGCGT GTCCGCGGGG 
GACGCCGAGG CGGTGACCGC GCGGGTCCTC AAGGGCTCCA ACATCGTGCT 
GGGCCCGTAC GCGCGCGGCG ACGCGAACGT GATCGCCGCG GACTTCGTGA 
AGAGCAGCGT CCGCCCCGAT GACTGCCCCA GGGACGGGCT ACCGGAGTTC 
GCCCTTGTTG GCCGGTCCAA CGTCGGCAAG TCGTCGCTGC TCAACTCGCT 
CGTCCGGCGC AAGCGCCTCG CGCTCACTTC CAAGAAGCCT GGGAAGACAC 
AATGTATCAA CCATTTCAAA GTAAACGACA GTTGGTACCT TGTTGATTTG 
CCTGGTTATG GGTATGCTGC TGCACCACAA GAAGCTCGCA CGAATTGGGA 
TGAATTTACT AGAAATTACT TCCTCGGCAG GGAGAATTTG GTATCAGTTT 
TTCTCCTAGT AGATGCAAGT ATTCCAGCTA AGAAGATTGA TCTTGACTAT 
GCTAGCTGGC TTGGTCAAAA CAAGGTCCCC ATGACGCTAG TGTTCACAAA 
ATGTGACAAA CGCAAGAAGA AGAAAAACGG TGGCAAAAGA CCGGAAGAAA 
ATGTAGAAAA CTTCCAGAGC TTGATCCGTG AATATTTTGA GGCAGCACCC 
CCTTGGATCA TGACGAGCAG TGTCACCAAT CAAGGCCGAG ACGAGATACT 
TCTGCACATG TCTCAGCTCA GGAACTATTG GCTCAAGCAT TAAGATGAAA 
TAAAAATACT AATACTAGAA CTCAAGCAGC AGCAACGCAT GCAAACCCTG 
TTGCTCATTG ATGCCTCGGC AATTCAGCAC CTTTGCAATC AGGCCTTCAC 
CAACTGACTT GCCTTTTGAG CTGTTGATTG TAAACTATTG CCTCTGTACA 
TGATTACTCA ATCAACAGAT TGGAGAATTG GGGAATACAA ACAAGCTGCT 
ACATCAACTA CCCTAGGTTC AAGACCTTTC AAGGAACGGT TTCTGTGATG 
GGCAGAATGC ATGGAACAGG CCACATTATT GGGATCCATC ATACAATGGT 
TTCTTTTATC ACATGCTTAA TCAAGTGCGT GCTGGCACAA GTCCGCCTGG 
AGAATGGAGA TAGAAAAATG CTCAGGTAAT TGCAGGCTAG TTTGATAGTA 
CTAGTAAACT GTTCTTATTA GTAGGATCCC ATGCTGATGT GTGTTTCGTT 
TGTTAGGCCT CTCTCCTTTC TTAGGTTTGC CCTTCCCATC TGTCCTCAGT 
TCTGTCTTAC TGCTAACAAA ATACTTAACA CCTGTATGTT TGTCTTTATA 
AGGTCAGATC TT

Gene models with high sequence identity

AT5G11480.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
E-value: 2e-105; Score: 380.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	GTP-BINDING PROTEIN ENGB-RELATED	2.6e-64
HMMPanther	MSS1/TRME-RELATED GTP-BINDING PROTEIN	2.6e-64
HMMPfam	GTP-binding protein, HSR1-related	1e-17
superfamily	P-loop containing nucleoside triphosphate hyd	1.5e-37
HMMTigr	GTP-binding protein, ribosome biogenesis, YsxC	2.2e-74
Gene3D	no description	1.2e-47
HAMAP	GTP-binding protein, ribosome biogenesis, YsxC	27.519

See the detailed result >

AT5G11480.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: barrier septum formation; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein, ribosome biogenesis, YsxC (InterPro:IPR019987); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G22870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR