K30339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30339

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30339

Determination of introduced cDNA(s)

  • J013056K15 - Rice Full-length cDNAs - Original: J013056K15

    full reading [+] show sequence

    Nucleotide sequence: J013056K15 - full reading
    GCCCTCTCTC GGTTCTCGCG GTGGTGGCCA CGGGCGCAGG TGAGGGGATG 
    GTGGACGGCA GGATGGCCGG CACGGCGGCG GCGCTGGGCC TGTCGGTGGT
    GTCGTCGGTG TCGATCGTCG TCTGCAACAA GGCGCTCATG AGCACACTCG
    GCTTCGTGTT CGCTACTACG CTGACAAGCT GGCATCTCCT GGTGACATTT
    TGTTCCCTTC ATGTGGCTCT TCAGATGAAG CTTTTCGAGA ACAAAGATTT
    AGACCCCAAG ACAATCATTG GATTTGGAAT ACTAAATGGC ATATCTATTG
    GGTTGCTTAA TCTGAGCCTT GGATTCAACT CTATTGGCTT TTATCAGGTA
    ACCAAGCTGG CAATAATTCC ATGCACTGTA TCTTTGGAGA CTATATTGTT
    CAGGAAAACA TTCAGCCGGA GAATCCAAAT GGCACTGGCA GTTCTTTTGT
    TTGGTGTAGG TGTTGCAACA GTGACAGACC TGCAACTGAA TAGACTGGGA
    TCGCTGCTGT CTCTATTTGC TGTACTCACC ACGTGCATTT CACAAATTGT
    ATCCTCTAAA CAAAGTATAC ATTCAATATT ATTTTCTTTG CACTAAAATA
    ATGACACTTG ATTCTTTGTT TTTAATAGAT CAATAATCAG ACATATGCAT
    TATAGAAAAA ATGGCTTTTG GTGTTAGCTC ATATCAAATA TATATTAATT
    TACCAGATAA ATAGTTTCTT ATATCTATTT TGATATGCAT TCTCTTGCAC
    CTAAAGTGGA TGATAACTTT TAACATACTC TGAAACTCTG ATAGTTTCTA
    CGACCTCCGT CCCAAAATAT GGCAACTTTT GGCTATGATG TATCCAGATT
    CATAGCTAAA AATGCTTACA TTTTGGGACG GAGGGAGTAG GTGTTTCTCA
    AATTTAAGTA GCTGATCTGA TACACGTTGT TTTTTTTCTC TCCATTTTTT
    TGTATCAGCT ATAAATATGT GGATCCAACG TAGTATATTG ATTTAACATC
    ATATCCTTCT TCTGCTATCA CTATTTCCTT CCCCATACAG CTTAACCAAT
    TTTGCTAGAT GACAAACTTT ATCCAGAAGA AATTCAAAGT CTCTTCAACT
    CAACTGCTCT ACCAATCTTG TCCATACCAA GCGCTGACTC TTTTCATCAT
    TGGTCCATTT CTTGATGGTT TTCTTACTAA CCAGAATGTA TTTGCCTTCA
    AGTACACGAG TGAAATCCTT GTGAGCATTC CCTGGCTCGA TGTTCCCTTT
    CTTATTTGTC TTCTATCCAT TATACAGTAA TATATCTGTT TGTTATCTTT
    TTGTCAGGTA TTCATCGTTC TTTCCTGTCT AATATCTGTC TCGGTAAACT
    TCAGTACATT TCTTGTGATC GGGAAAACAT CTCCTGTAAC ATACCAAGTA
    GTAGGCCACT TAAAAACCTG TATCATCCTC GGTTTTGGAT ATGTTTTATT
    TAACGACCCA TTTAGTTGGA GGGACATATT AGGGATTCTT CTTGCCTTGT
    TAGGAATGAT CCTGTATTCT TTCTTTTGCT TGATGGAGAA TAAACAGAAG
    GCCCCGGAAT TGTCAGCTCC ATTTTTCCAC ACTAAGGTAT CAGATAGCAC
    TTCTTTTCTG AAGCCTTAAT GCTACATTTG CGACTTGCAG CTATTTTTTT
    CATATCTCGT CCTTGCAACT TTAGCTGACC CGTTATTTTC TTTCACTAAC
    TTACTTTTTC GTGAATGTGC AAAAGGATTA CACGTCAATA TATTAGAACT
    TTCACTAACT TACTATAATT CCTTGCTTCT CACCCATCGG TAATCGCCCT
    TGCTTATCAA CCTGGCAGGT GAAAGGAGGT GAAGCAGGGA CTCTTCTCCT
    AGTACAGAAC GGGTCAGCTA AAGTTGCAGA TGGTGTTGTG ACTGAGGGCC
    CAATGTGGAG GTCAAACAGA GACTTGGACG CATGATCATC CCGCTCCTGC
    AGAAGGGATC AAGGGACTGA CATATGGTCT GAAACCGGTG TAATTTTCAT
    CGGCATTTTG CTCCAGTTCA CTCCAGCTAG CTAGTTCTGA AGGCTCCTTG
    CTCTGCGTCT TGTACATACA TATTCGGCAC CTATTTTTGC TACGACTGTA
    CATAACATGT CCACGGCTGG AATTAAACAA ACATTTGCAT TCATACTATT
    ATATGAAGAT TTCATGTCTG TTATTTACCC G

    Gene models with high sequence identity

    1. AT1G06890.3 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
      E-value: 6e-51; Score: 199.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SOLUTE CARRIER FAMILY 35 8.2e-39
    HMMPanther SOLUTE CARRIER FAMILY 35 4.4e-25
    HMMPfam Protein of unknown function DUF250 0.0000092
    HMMPfam Protein of unknown function DUF250 3.7e-20

    See the detailed result >

    AT1G06890.3

    Model type
    Protein coding
    Short Description
    nodulin MtN21 /EamA-like transporter family protein
    Computational Description
    nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2).
    Link
    InterPro Scan - TAIR