K30339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30339

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30339

Determination of introduced cDNA(s)

  • J013056K15 - Rice Full-length cDNAs - Original: J013056K15

    full reading [+] show sequence

    Nucleotide sequence: J013056K15 - full reading 
    GCCCTCTCTC GGTTCTCGCG GTGGTGGCCA CGGGCGCAGG TGAGGGGATG 
    GTGGACGGCA GGATGGCCGG CACGGCGGCG GCGCTGGGCC TGTCGGTGGT 
    GTCGTCGGTG TCGATCGTCG TCTGCAACAA GGCGCTCATG AGCACACTCG 
    GCTTCGTGTT CGCTACTACG CTGACAAGCT GGCATCTCCT GGTGACATTT 
    TGTTCCCTTC ATGTGGCTCT TCAGATGAAG CTTTTCGAGA ACAAAGATTT 
    AGACCCCAAG ACAATCATTG GATTTGGAAT ACTAAATGGC ATATCTATTG 
    GGTTGCTTAA TCTGAGCCTT GGATTCAACT CTATTGGCTT TTATCAGGTA 
    ACCAAGCTGG CAATAATTCC ATGCACTGTA TCTTTGGAGA CTATATTGTT 
    CAGGAAAACA TTCAGCCGGA GAATCCAAAT GGCACTGGCA GTTCTTTTGT 
    TTGGTGTAGG TGTTGCAACA GTGACAGACC TGCAACTGAA TAGACTGGGA 
    TCGCTGCTGT CTCTATTTGC TGTACTCACC ACGTGCATTT CACAAATTGT 
    ATCCTCTAAA CAAAGTATAC ATTCAATATT ATTTTCTTTG CACTAAAATA 
    ATGACACTTG ATTCTTTGTT TTTAATAGAT CAATAATCAG ACATATGCAT 
    TATAGAAAAA ATGGCTTTTG GTGTTAGCTC ATATCAAATA TATATTAATT 
    TACCAGATAA ATAGTTTCTT ATATCTATTT TGATATGCAT TCTCTTGCAC 
    CTAAAGTGGA TGATAACTTT TAACATACTC TGAAACTCTG ATAGTTTCTA 
    CGACCTCCGT CCCAAAATAT GGCAACTTTT GGCTATGATG TATCCAGATT 
    CATAGCTAAA AATGCTTACA TTTTGGGACG GAGGGAGTAG GTGTTTCTCA 
    AATTTAAGTA GCTGATCTGA TACACGTTGT TTTTTTTCTC TCCATTTTTT 
    TGTATCAGCT ATAAATATGT GGATCCAACG TAGTATATTG ATTTAACATC 
    ATATCCTTCT TCTGCTATCA CTATTTCCTT CCCCATACAG CTTAACCAAT 
    TTTGCTAGAT GACAAACTTT ATCCAGAAGA AATTCAAAGT CTCTTCAACT 
    CAACTGCTCT ACCAATCTTG TCCATACCAA GCGCTGACTC TTTTCATCAT 
    TGGTCCATTT CTTGATGGTT TTCTTACTAA CCAGAATGTA TTTGCCTTCA 
    AGTACACGAG TGAAATCCTT GTGAGCATTC CCTGGCTCGA TGTTCCCTTT 
    CTTATTTGTC TTCTATCCAT TATACAGTAA TATATCTGTT TGTTATCTTT 
    TTGTCAGGTA TTCATCGTTC TTTCCTGTCT AATATCTGTC TCGGTAAACT 
    TCAGTACATT TCTTGTGATC GGGAAAACAT CTCCTGTAAC ATACCAAGTA 
    GTAGGCCACT TAAAAACCTG TATCATCCTC GGTTTTGGAT ATGTTTTATT 
    TAACGACCCA TTTAGTTGGA GGGACATATT AGGGATTCTT CTTGCCTTGT 
    TAGGAATGAT CCTGTATTCT TTCTTTTGCT TGATGGAGAA TAAACAGAAG 
    GCCCCGGAAT TGTCAGCTCC ATTTTTCCAC ACTAAGGTAT CAGATAGCAC 
    TTCTTTTCTG AAGCCTTAAT GCTACATTTG CGACTTGCAG CTATTTTTTT 
    CATATCTCGT CCTTGCAACT TTAGCTGACC CGTTATTTTC TTTCACTAAC 
    TTACTTTTTC GTGAATGTGC AAAAGGATTA CACGTCAATA TATTAGAACT 
    TTCACTAACT TACTATAATT CCTTGCTTCT CACCCATCGG TAATCGCCCT 
    TGCTTATCAA CCTGGCAGGT GAAAGGAGGT GAAGCAGGGA CTCTTCTCCT 
    AGTACAGAAC GGGTCAGCTA AAGTTGCAGA TGGTGTTGTG ACTGAGGGCC 
    CAATGTGGAG GTCAAACAGA GACTTGGACG CATGATCATC CCGCTCCTGC 
    AGAAGGGATC AAGGGACTGA CATATGGTCT GAAACCGGTG TAATTTTCAT 
    CGGCATTTTG CTCCAGTTCA CTCCAGCTAG CTAGTTCTGA AGGCTCCTTG 
    CTCTGCGTCT TGTACATACA TATTCGGCAC CTATTTTTGC TACGACTGTA 
    CATAACATGT CCACGGCTGG AATTAAACAA ACATTTGCAT TCATACTATT 
    ATATGAAGAT TTCATGTCTG TTATTTACCC G

    Gene models with high sequence identity

    1. AT1G06890.3 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
      E-value: 6e-51; Score: 199.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SOLUTE CARRIER FAMILY 35 8.2e-39
    HMMPanther SOLUTE CARRIER FAMILY 35 4.4e-25
    HMMPfam Protein of unknown function DUF250 9.2e-06
    HMMPfam Protein of unknown function DUF250 3.7e-20

    See the detailed result >

    AT1G06890.3

    Model type
    Protein coding
    Short Description
    nodulin MtN21 /EamA-like transporter family protein
    Computational Description
    nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2).
    Link
    InterPro Scan - TAIR