K30441

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30441

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30441

Determination of introduced cDNA(s)

  • J023047N04 - Rice Full-length cDNAs - Original: J023047N04

    full reading [+] show sequence

    Nucleotide sequence: J023047N04 - full reading 
    GAGCCTCATC TTTTGGTTGG TTTCGTTTTG GTATTCCCAT ACACTTTGTT 
    TCTCTTCCCC GTCTCGTGGT CGAGAGAAAC CGAGAGGAGA GAGAGGGAGA 
    GGAGCGCTGC CGATTTTCCG GAGGGGGAGA TCTTTTTCTT CTCCCTGAAG 
    GTTCGAGATC GATCTGCGAC GAGGAGGAGC GGGGAATCGT AACTTTATTT 
    CCGAGGAAAT TTCAACAAAT TGATGCACTA ATGGAGTCCA AGGGTGGCAA 
    AAAGAAGTCT AGCAGTAGTC GTTCCTCCCT GATGTACGAA GCTCCCCTCG 
    GCTACAGCAT TGAGGACCTC CGACCTGCCG GCGGCATCAA GAAGTTCCGC 
    TCTGCTGCTT ACTCCAACTG CGCGAGGAAG CCCTCTTGAT AGCCCCCTTG 
    GCTACCTTGA CCTAGTAGTT TAGTTACTCC TCTGAATTCT CGTTTTGGGC 
    TTTCTTACAT CTCTCTGGCT AGCTGCTTCC CAGTGACCGG GAAGGTCATC 
    AGTCCTGCTT CCTTTCTTCC TCATCTCTGG CATCGTCCTT CGAAACAATG 
    GCAGTCCTGT CAGTTGCTGA CTCTCCACCG GTCTCGGCGA TCGGGTTTGA 
    GGGATATGAG AAACGCCTCG AGATCACTTT CTCCGAGGCG CCTGTCTTTG 
    CTGACCCCAA TGGCAGGGGG TTGCGTGCAC TGTCACGTGC TCAGATTGAC 
    ACTGTTCTTG ATCTGGCGAG GTGCACCATT GTGTCTGAGC TCTCCAATGA 
    GGTCTTCGAC TCGTATGTCC TTTCTGAATC GAGCCTCTTT GTGTACCCAT 
    ACAAGATTGT GATCAAGACC TGTGGGACTA CCAAGCTCCT GCTCGCCATT 
    CCGAGGATTC TTGAGCTTGC TGAAGAGCTA TCTCTGCCAC TTGAAGCTGT 
    GAAGTACTCT CGTGGGACAT TCATTTTTCC TGAAGCACAG CCCTCTCCAC 
    ACAAGAACTT CTCTGAGGAG GTTGCAGTCC TGAACCGCTA CTTCGGCGGT 
    CTCAAATCTG GTGGCAACGC ATACGTGATT GGAGATCCTG CAAAGCCAGG 
    GCAGAAGTGG CATGTCTACT ATGCCACCCA GCACCCGGAG CAACCTGTGG 
    TCACTCTTGA GATGTGCATG ACTGGGCTGG ACAAGAAGAA AGCTTCTGTC 
    TTCTTCAAGA CTTCTGCTGA TGGACACACA AC

    Gene models with high sequence identity

    1. AT3G25570.2 [+] show detail - Adenosylmethionine decarboxylase family protein
      E-value: 1e-60; Score: 230.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan S-adenosylmethionine decarboxylase, conserved site 0
    Gene3D S-adenosylmethionine decarboxylase, core 5.3e-72
    superfamily S-adenosylmethionine decarboxylase, core 3e-78
    HMMPanther S-adenosylmethionine decarboxylase 2.5e-92
    HMMTigr S-adenosylmethionine decarboxylase subgroup 6.1e-46
    HMMPfam S-adenosylmethionine decarboxylase 2.1e-82
    HMMPfam S-adenosyl-l-methionine decarboxylase leader peptide 3.3e-31

    See the detailed result >

    AT3G25570.2

    Model type
    Protein coding
    Short Description
    Adenosylmethionine decarboxylase family protein
    Computational Description
    Adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine decarboxylase (TAIR:AT3G02470.4).
    Link
    InterPro Scan - TAIR