K30512

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30512

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30512

Determination of introduced cDNA(s)

  • J033080D22 - Rice Full-length cDNAs - Original: J033080D22

    full reading [+] show sequence

    Nucleotide sequence: J033080D22 - full reading
    GACGCAGCCG TGGAACTCTC TCCTCCCTCT CCTCCTCACC TACGCATCCC 
    GCGCCCATGG CCGCCGCCGC CGCCGCCGCC TCCACGCCGC CGTGCTGAGC
    CCACCCCCGA GAGACCTAGC TCACGCCGAG GACGCTACCA CTCCGGCGCG
    GGCGGCGGCC TCGGGATCGG GGCGGATCAG ATGCTCTCCC TCGGCGCCAT
    CCGCAAGCTC TGCGCCGCGT TCGACGCCAT CGCGCTCACC GTCATCGCGG
    CGGGGCTCTC CCGGACCTCG CACCACCCGT TCTCCGCGCA CGCGCACTAC
    TCCCAGCCGG ACTTCCCCAC CATCGCCTCC TGCCGCGCCG CCGTCGCCAG
    CTCCAAGTGG CGGCGCCGCC ACCCCTCCAC CACCAAGGAG TCCGCCGGCG
    TCGAGCCTGC CGAGCCCCCC GTTCTGGTCA GGATCAAGAA CGAGAGGGAC
    CCGGTGCGGC TGTACGAGCT GTTCAGGGCC AACGCGCACA ACCGCCTCTT
    GATTGAGAAC CGGTTCGCGT TCGAGGACGC GGTGGCGCGC CTGGCAGGTG
    CTCGACGGAA TGACCTAGTG GAGGAGATAC TCGAGCAGCA CAAGGCGTTG
    CCTCAGGGGA GGCGGGAAGG GTTCGTGGTC AGGATCATAG GTCTGTACGG
    CAAGGCAAGG ATGCCGGACC ACGCGCTGAG CACTTTTCGC GAGATGGGAT
    TGTATGGATG CCCGCGCACG GCCAAGTCAC TCAATGCCAC GATGAAGGTG
    CTACTGCGAG CGCGGCTGTT TGATGAGGTC CTTCAGTTGT TCGAGAGTTC
    AGAGACATAT GGGGTTGAGT TGGATGACAT TTCGTACAAT ACAGTGGTGA
    AAATGATGTG TGACTTGGGG GAACTTCGAG CGGCATTTCG GGTTATGCAG
    GAAATGGAGA AGGCGGGGGT GAGACCGGAT GTCATCACAT ACACAACACT
    CATGGATGCA TTCTATAAGT GTGGCCAGCG TGAGGTCGGG GATGGTCTGT
    GGAATCTCAT GAGGTTGAGA GGTTGCATGC CAACACTTGC CAGTTACAAT
    GTGAGAATCC AGTTCTTGGT TAACAGGAGA AGGGGCTGGC AAGCGAATGA
    TTTGGTGAGG AAAATGTATG CATCAGGCTT AAGGCCAGAT GAGATCACGT
    ATAATCTAGT TATTAAGGGT TTCTTCATGA TGGGCGAGCA TGAGATGGCT
    AAGACAGTAT TTGGTGCGAT GCATGGGAGG GGATGCAAGC CAAATGCTAA
    GGTTTACCAG ACAATGGTGC ATTACCTCTG TGAGAGAAGG GAGTTTGATT
    TGGCATTCAG GCTGTGCAAA GACAGCATGG AGAAAAACTG GTTTCCAAGT
    GTTGATACTA TTAACCAACT GCTAAAAGGC CTCATATCAA TTTCAAAGGA
    CAGGAATGCA AGAGAGATAA TGAAATTGGT AATAGGAAGA AAACCTTCCT
    ATTCAAATGA TGAAGTGAAA ACCTTCCAGG ACATATTGTC TCTTGGGAAC
    ACCAGAAGAT AATTTGAGTA TTTGACTGCT GGATGGAATT TTTTGCTGTA
    TGTCCACCAC ATGTAATTTT AACACTTGGT TGGCACTCAT TTTATGCCTG
    ACTGAATGGG AGAACAGTGA GGAAATAATG TTGGGAATAC AGGACAGCGG
    AAACTATGGG GAATGAAATT TTGGACTTGT GGTTATTCAA GCAGCATTGT
    TCTCAGAATC AATTGATGAC ACAAGGCAGG CATTTTGTTG ACAGTTCCAT
    TTGTTCTGTT GGCTTGGAGC ACTGAAGGGA AAAAAAAAAC GTATAGATCA
    ATCTCCGGGA AGTAAATTTT TCTCGGATTG GTGGCAGATA AACATTTTGT
    ACCTCAACGT TTTGTAGCAT GTACAAGC

    Gene models with high sequence identity

    1. AT1G80150.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 2e-112; Score: 403.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pentatricopeptide repeat 0.011
    HMMPfam Pentatricopeptide repeat 0.00027
    HMMPfam Pentatricopeptide repeat 0.0016
    HMMPfam Pentatricopeptide repeat 0.00013
    HMMTigr Pentatricopeptide repeat 0.18
    HMMTigr Pentatricopeptide repeat 0.056
    HMMTigr Pentatricopeptide repeat 0.0000000067
    HMMTigr Pentatricopeptide repeat 0.000023
    HMMTigr Pentatricopeptide repeat 0.091
    HMMTigr Pentatricopeptide repeat 0.00000001
    HMMTigr Pentatricopeptide repeat 0.00023
    superfamily TPR-like 0.0000000000011
    ProfileScan Pentatricopeptide repeat 6.127
    ProfileScan Pentatricopeptide repeat 12.09
    ProfileScan Pentatricopeptide repeat 7.52
    ProfileScan Pentatricopeptide repeat 10.523
    ProfileScan Pentatricopeptide repeat 11.268
    ProfileScan Pentatricopeptide repeat 7.761
    ProfileScan Pentatricopeptide repeat 8.572
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3.2e-75

    See the detailed result >

    AT1G80150.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G36680.1); Has 20922 Blast hits to 6391 proteins in 198 species: Archae - 3; Bacteria - 20; Metazoa - 73; Fungi - 116; Plants - 20269; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR