K30528

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low saturation (PATO:0000328) (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30528

Determination of introduced cDNA(s)

J033069P18 - Rice Full-length cDNAs - Original: J033069P18

full reading [+] show sequence

GCCACGCACG CACGCCTTTC CTTCCTTCCT CCCTCCCCTC CCTCCTTCCC 
CCACCCGCTT CCCTTGCCGT CGCCGCCGCC GCCGACCGCC GCGGGAGGGG 
AGGTCCCCGG CGCCATCTCC CAGAAATGGA CGCCTGTTTT TCAACACAGC 
TTATTGATGG AGATGGCGTT TTCAATGTTT CTGGATTGGA GAACTTCATG 
AAGGAAGTTA AAATGGGCGA ATGTGGGCTT TCATATGCTG TTGTGTCAAT 
AATGGGTCCA CAAAGTAGTG GAAAGAGTAC ACTTTTAAAT CACCTTTTCC 
GCACCAATTT CAGGGAAATG GATGCCTTCA AAGGAAGGTC ACAGACTACC 
AAAGGTATAT GGATGGCGAA GGCCCATAAT ATTGAACCAT GCACTCTTGT 
AATGGATTTG GAAGGCACGG ATGGTCGAGA GAGGGGAGAG GATGACACAG 
CCTTTGAAAA GCAAAGTGCA CTGTTTGCTT TGGCTGTTTC AGATATTGTG 
TTGATCAATA TGTGGTGTCA TGACATTGGT AGAGAACAGG CTGCGAACAA 
ACCTCTTTTG AAGACTGTTT TCCAGGTTAT GATGAGATTG TTCAGTCCAC 
GTAAAACGAC ATTGTTGTTT GTTATTCGTG ATAAATCAAA GACACCTCTG 
GAAAATCTTG AACCGATTCT AAGGGAAGAT ATTCAGAAGA TATGGGATGG 
TGTCCCTAAA CCCCATGCCC ACAAGGAAAC TCCACTGAGT GAATTTTTCA 
ATGTCGAAGT TGTGGCCCTA TCTAGTTATG AGGAAAAGGA GGAGTTATTC 
AAAGAGCAGG TTGCCAGTTT AAGAGATAGG TTCCAACAGT CTATTGCTCC 
TGGTGGACTT GCTGGAGATC GGCGGGGCGT TGTCCCTGCA TCTGGTTTCT 
CTTTCAGTTC ACAACAATTT TGGAAGGTCA TTAAGGAGAA TAAAGACCTT 
GATCTACCAG CTCATAAAGT TATGGTCGCT ACTGTACGCT GTGAGGAAAT 
CGGTAATGAG AAAATTGCCA GTTTTACAGC TGATGAGGAG TGGCAACAAT 
TTGAGGAAGC TGTTCAACAT GATTACGTGC CTGGGTTTGG GAAGAAGATC 
AGCAACCTTC TTGACAGATG CTTATCAGAG TATGACATGG AGGCTATTTA 
TTTTGATGAA GGTGTCAGAA CTTCGAAAAG GCACCAACTT GAGTCTAAAC 
TTTTGCAGCT TGTCAACCCT GCATACCAAA ATATTTTGGA TCATTTACGG 
ACTAGAACTT TAGAAGTATT TAAGGAGTCC TTTGACAAGT CCCTAGAAAA 
GGAGGGTTTT GCTGTTGCTG CTCGTGACTG TACTAAGGTT TTCTTGGAGA 
AGTTTGACAA AGGATCCGAA GATGCTGCTA TCCAACAAGT GAAATGGGAC 
CCATCAAAAA TTAAGGATAA GCTTAAGCGT GACATTGAGG CGCATGTGGC 
ATCAGTTCGT GCCAAAAAAA CTATCTGAAC TTTGTTCCAA ATACGAGGGA 
CAACTTACCA AGGCACTGGC AGAACCAGTT GAAGCTCTTC TAGATTCAGC 
CAGTGAAGAA ACCTGGCCAG CAATTAGGAA GCTTCTTCAA CGCGAGACAA 
AATCTGCTGT TTCGGGTTTT GAATCTGCCA TGGCATCTTT TGAGCTTGAT 
GAGGTGACTC AGAAAGAATT ACTTTCAAAG CTGGAGAGTC ACGGAAAGAG 
CGTTGTTGAA TCAAAGGCAA AAGAGGAAGC TGCAAGGGTC TTGATTCGGA 
TGAAGGACAG GTTCTCAACA CTATTCAGCC GTGATGCTGA CTCAATGCCA 
AGAGTGTGGA CCGGAAAGGA GGACATAAAG GCCATTACTA AAACTGCTCG 
TTCAGCTTCT ATGAAGTTGC TTTCTACAAT GGCTGCAATT CGATTGGATG 
AAGATGGTGA CAACATTGAG AACACCCTGT CCCTTGCTCT AGTTGACACA 
GCAAGGCCAG GGACTACAGA TAGGAGCATC CAATCGTTCG ATCCACTTGC 
CTCTAGCTCA TGGGAAAGGG TTCCAGAGGA GAAAACTTTA ATTACACCTG 
TCCAGTGCAA ATCTTTATGG AGGCAATTTA AGGCTGAAAC TGAATATACT 
GTCACACAGG CCATAGCTGC TCAGGAGGCA AATAAGAGGA ACAACAACTG 
GCTGCCACCT CCATGGGCAC TTGCCGCAAT GGCTATCCTT GGATTCAACG 
AGTTCATGAC ATTGTTAAAG AATCCCCTTT ACCTGGGAGT CATATTTGTT 
GTTTTCCTTG TTGGAAAAGC CATGTGGGTA CAGCTAGACA TTGCCAAGGA 
GTTCCAAAAT GGATTTCTTC CAGCCGTCCT ATCACTTTCG ACGAAATTCG 
TTCCCACGAT AATGAACATC CTGAAGAGAT TAGCTGATGA GGGGCAGAGA 
CCTGCAGCCC CAGAGAGGCA AAGAGAGATG GAACTCCAAC CAAAATCCAC 
AAGGAATGGT TCACACAGCA ACGTGACATC GGCAGGGTCA TCCAGCATAA 
CCTCTTCGGA GAGTGGACCC GAATATTCAA GCCCGATTGC ACACTGATCA 
GTTCATCTAT AGCTTTTAGC TGAAAACCCC AGCAGTTGTA GTTTCAACGG 
GTGAGCCTTT GGAGACCGAA GCGCCTTGCA GTTTTTGTAA GCTTGCCCTT 
CCCCATCTGA TGTACGGAGA TTCAATGGCC CCAGCCAGAG GTTATTTATG 
GGATTTTGGG CCCAGGGAGT TTGTTTGTAA GAAACGCTGT AGAATATGTT 
TTATTTCATT TTTTTTTTGT AACAGCTTAT ATGATGGTTG TATAGAAGAT 
TTGCGGTTTT ATCATCTCAA CCCAAGGAGG CCAGGGGAGC ACAGCAGTGC 
ATTCTACACT ACTAAATACA GTTGATTGCA TGGACACGAA AAATGTATGT 
ACATGTCTTG AAACTGCAGT CCGATTGCTT TTGAGAATGA CCCGTTTTGC 
TTAAACAAGA ATGTATTGCG ATTTTGTGAG CTGTTTGC

Gene models with high sequence identity

AT3G13870.1 [+] show detail - Root hair defective 3 GTP-binding protein (RHD3)
E-value: 0; Score: 402.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	GUANYLATE-BINDING PROTEIN	0.00027
superfamily	P-loop containing nucleoside triphosphate hyd	2.5e-29
Coil	coiled-coil	0
HMMPfam	Root hair defective 3 GTP-binding	5.4e-91
HMMPfam	Root hair defective 3 GTP-binding	9.4e-188

See the detailed result >

AT3G13870.1

Model type: Protein coding
Short Description: Root hair defective 3 GTP-binding protein (RHD3)
Curator Summary: required for regulated cell expansion and normal root hair development. Encodes an evolutionarily conserved protein with putative GTP-binding motifs that is implicated in the control of vesicle trafficking between the endoplasmic reticulum and the Golgi compartments.
Computational Description: ROOT HAIR DEFECTIVE 3 (RHD3); FUNCTIONS IN: GTP binding; INVOLVED IN: root epidermal cell differentiation, plant-type cell wall biogenesis, ER to Golgi vesicle-mediated transport, actin cytoskeleton organization, cell tip growth; LOCATED IN: endoplasmic reticulum, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: Root hair defective 3 GTP-binding protein (RHD3) (TAIR:AT1G72960.1); Has 563 Blast hits to 546 proteins in 189 species: Archae - 0; Bacteria - 2; Metazoa - 79; Fungi - 191; Plants - 135; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).
Link: InterPro Scan - TAIR