K30542

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30542

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30542

Determination of introduced cDNA(s)

  • J033126C16 - Rice Full-length cDNAs - Original: J033126C16

    full reading [+] show sequence

    Nucleotide sequence: J033126C16 - full reading 
    GGCGCACTTC TTTCCCCTCC AAATAAGCTC GTCCAGTCCA AGCACACAAG 
    CCATTCCACC GCTCGCCGTC GCTGTCTCCC ATCCCATCCC ATGCATCACT 
    AGCGGATTTG TGGAGTGGTT GCGCCCCCTG CGAGCGAGCT CTGTTCGTAC 
    CGCGCGCTCC GGTGCGGAGT GGTTGCTGGC CGGCGAGGCG GGCGGACGGA 
    CGCGTCGATG CGCGTGGCAG TAGCTGCGTG CGGGTGACGA AGCAGGGGCA 
    CTTGCTATAT CCGTCGCCTC TTGGCGGATG TGCGGGATTC TGCGCGCAGT 
    ACGCGGCGGC CATGGACGCG TCCTCGCCCT TCAGCTTCCA CGAGCTCAGG 
    CGGCAGGCCT CGTCCTACCT CACCGACAAG ATCCGCTCCG CGCGGCTCGC 
    GCTCACCGAT GTTACCCCGA CGCAGCTGAT GACGGAGGAG GCGACGAGCG 
    GGGACGCATC GCCGCCGAAC GTGAAGACGA TGAGCCTCAT CGCGCGGCAG 
    GCGTTCGAGA TCGACGAGTA CGTCAGGATC TCCGACATCC TCCACAAGAG 
    GTTCGCGAGG TTCGACAGGC GGCAGTGGCG TGAGGCGTAC AAGGCCCTCC 
    TCCTCCTCGA GCACCTCCTG ACGCACGGCC CCCGTAGCGT CGCGTTGGAG 
    TTCCAGAGGG ATCGGGAGGT CATCGAGCAG ATGGTCTCCT TCCAGCACAT 
    CGACGAGAAA GGTTTCAACT GGGGGATGAC GGTGAAGAGC AAGTCGGAGC 
    GCGTGCTGAG GCTGCTGGAG CGGGGCCCCT TCCTGGAGGA TGAGTGTGAG 
    CGTGCGCGCA AGATAGCGCA CGAGATCAAG GGATTCGGCA GCTTCAACCT 
    CAGCAGCGCG CATGCGTCGG GGTCGGCGGC GGCAGCCCTC CGCGCGGGGG 
    CGATGGAGCA CCAGTGCTAC GGCCGGAGCA ACTCGCGGTA CGAGGGCAGG 
    TGGAGGAGGG AGGCCTGCGT GGACGACGGC GACAAGGAGA ACCTGCTGGT 
    GGTGTCGATG GCCGAGGCGA AGGCCGAGGC GGCGGCGGAG GAGCCGCACC 
    ACTACCACCA CCCGTTCTAC GGCTTCGGGC AGCAGCGGCC GGAGGCGATG 
    CTGCTCCTGA GCCAGTAGTG ATCGTTTGGG TGGATGGTTC TTCGTCGATC 
    GCATCGTTCG TTGGTTTGTG ATGCGTGAGA AAAAATCCTG TAAAGTCAGT 
    GGCTTGCTGG CATCCTCTTT GTGATGACCC TTTTGTAGTC GTCGTCCTTA 
    ATTTCAGTTC TGATTTCTGT

    Gene models with high sequence identity

    1. AT3G46540.1 [+] show detail - ENTH/VHS family protein
      E-value: 7e-52; Score: 201.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily ENTH/VHS 2.2e-35
    HMMPanther ENT1-RELATED 1e-68
    HMMPanther EPSIN/ENT-RELATED 1e-68
    HMMSmart Epsin-like, N-terminal 0.00000000021
    Gene3D ENTH/VHS 5.7e-37
    ProfileScan Epsin-like, N-terminal 28.92
    HMMPfam Epsin, N-terminal 4.1e-24

    See the detailed result >

    AT3G46540.1

    Model type
    Protein coding
    Short Description
    ENTH/VHS family protein
    Computational Description
    ENTH/VHS family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT1G08670.1); Has 992 Blast hits to 992 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 538; Fungi - 205; Plants - 176; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR