K30543

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30543

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30543

Determination of introduced cDNA(s)

J023067H20 - Rice Full-length cDNAs - Original: J023067H20

full reading [+] show sequence

GACAGCAGGC GCCGCGCGCG CTATCGATCT CCGCCGCCTG ACCGCCGTAC 
CACCGTCTCC CGGCAGCTAG CGTCGACCGG CGTCATGTCG TCACGGCGAA 
GCATGGGAGC CCTGGCCGCT GTCTGCGTCT GCATGTTCGT CTTCGTCTCC 
TCCGCACGGG CAGAAGATCC GTATAGATTT TTCGATTGGG AGGTTACTAC 
TGGGAACATC AATCCTCTCG GCGTCCAGCA GCAGGGTATT CTGATCAATG 
GGCAATTTCC GGGGCCGGAG ATTGACTGCC AGACGAATGA TAACTTGATC 
GTCAACGTGC ACAACCGTTT GTCGGAGCCG TTTCTTCTGT CATGGAACGG 
GCTTCAGCAC AGGAAGAACT CGTGGCAGGA CGGCGTGTCC GGCACGAACT 
GCCCGATCCC GCCGGGCCAG AACTTCACCT ACCAAATGCA GGCCAAGGAC 
CAGATCGGCA GCTTCTTCTA CTTCCCGTCG CTCGCCTTCC ACAAGGCCGC 
CGGCGGCTTT GGCGCCATCC GCATCCGCAG CCGCCCGCTG ATCCCCGTCC 
CCTTCGATCC GCCGGCCGGC GAGTACACCA TGCTGATCGG CGACTGGTAC 
AAGACCAGCC ACAAGGCTCT GCAAGCCATG CTGGACAGTG GAAAGCAGCT 
GCCTTCCCCT GATGGCATCC TGATTAACGG CAAAGGTCCA AATGGCGCAA 
GCTTCACCGT TGAGCAAGGG AAGACGTACA GATTGCGCGT CTCCAACGTC 
GGCCTGCAGA GCACGCTCAA TTTGAGGATC CAAGACCACA ACATGACGCT 
GGTCGAGGTG GAGGGCACGC ACACGGTGCA GAACACCTAC AGCTCCCTCT 
ACGTCCACGC CGGCCAGTCG CTGTCCGTGC TGTTCACGGC CAACCGCCCG 
CCCGGCGTCT ACCAAATCAC CGTCTCCACC CGCTTCGCCA AGCGTGCACT 
CAACTCGTCC GCCGTCCTGC GCTACGCCGG CTCGAGCGCC ACCATCTCCT 
CACCGCCGCC ACCGGCTGGC CTCGCCGACG ACATCGACTT CTCGCTCGAC 
CAGGCTCGCT CCATCAGGAC GAACCTGACG GCGAGCGGGC CACGGCCGAA 
CCCGCAGGGC TCGTACCACT ACGGCTCGAT CAACGTGACA CGCACAATCC 
GGCTCGCCAA CTCGGCGGGG CGCGTCGCCG GCAAGCAGCG GTACGCCGTG 
AACGGCGTGT CGTTCGTGGA GGCCGACACG CCGCTCAAGC TGGCCGACTA 
CTACAGGATC AGCGACGTGT TCCGGCTCGG CGGCATCCCG GACGCGCCGC 
CCGCGGGCGC CGCGGCGGCT CCGCGGAGCG AGGCGGCCGT GATGGACTCC 
GACTACCGGT CATTCCTCGA GATCGTGTTC GAGAACAGCG AGGACAGCGT 
CCAGATCTGG CACCTCGACG GCTACAGCTT GTTCGTAGTT GGGATGGACA 
GGGGAGTGTG GAGCGAGCAG AGCAGGAAGA GCTACAACCT CGTCGACGCA 
GTCTCCCGGT GCACGGTTCA GGTGTACCCG AGGGCGTGGA CGGCGGTGTT 
GGTGGCGCTG GACAATGTGG GGATGTGGAA CCTCAGGTCG GAGGACTGGG 
CGCGCAGGTA TCAGGGCCAG CAGTTCTACC TCCGCGTGTA CACGCCGTCG 
CACTCGTTCC GCGACGAGCT CCCCATCCCG AGCAACGCGC TCCGCTGCGG 
CCGCGCCACC AACGCGAGCG GCAGAAGCCG AACCCTGTCG CGGTACTAGT 
TGACAAACCG GCTGGTGCTT GTCAACGACC CTAACACAAC ACCAGGAGTT 
ACTCGGCCAT GACAAGTTTG GCCAGGTATA TATACCGTAT ACGCAAATGC 
ATCAAAGTTT TACTCGGCCA TATCACAAGT TTGGCTGGTT GGGTTTATTT 
AGCGTGAGTT CAGTTTGTAA GGCGTAAATG AACTCCATAT AAACAAGGGG 
TGGGACCAAA GTGTAGCCTA TATGCCTTTT CTTACTCGCC AATGCACATT 
GCCAGGTTTA ATTTGC

Gene models with high sequence identity

AT1G76160.1 [+] show detail - SKU5 similar 5
E-value: 0; Score: 699.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PECTINESTERASE	6e-291
HMMPanther	MULTI-COPPER OXIDASE	6e-291
HMMPfam	Multicopper oxidase, type 3	4.5e-38
HMMPfam	Multicopper oxidase, type 1	2.7e-38
HMMPfam	Multicopper oxidase, type 2	1.9e-21
superfamily	Cupredoxin	5.2e-44
superfamily	Cupredoxin	3e-41
superfamily	Cupredoxin	3.3e-31
Gene3D	Cupredoxin	2.6e-36
Gene3D	Cupredoxin	3.9e-42
Gene3D	Cupredoxin	1.6e-48

See the detailed result >

AT1G76160.1

Model type: Protein coding
Short Description: SKU5 similar 5
Computational Description: SKU5 similar 5 (sks5); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5-similar 6 (TAIR:AT1G41830.1); Has 5094 Blast hits to 5026 proteins in 887 species: Archae - 12; Bacteria - 1432; Metazoa - 265; Fungi - 1965; Plants - 1269; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Link: InterPro Scan - TAIR